| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,918,886 – 21,918,956 |
| Length | 70 |
| Max. P | 0.845305 |
| Location | 21,918,886 – 21,918,956 |
|---|---|
| Length | 70 |
| Sequences | 11 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 96.73 |
| Shannon entropy | 0.06678 |
| G+C content | 0.43506 |
| Mean single sequence MFE | -13.06 |
| Consensus MFE | -12.90 |
| Energy contribution | -12.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21918886 70 + 27905053 UCUCCUCCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU .......((((((....))........(((((....)))))...))))....(((((.....)))))... ( -13.10, z-score = -1.66, R) >droSim1.chr3R 21779417 70 + 27517382 UCUCCUCCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU .......((((((....))........(((((....)))))...))))....(((((.....)))))... ( -13.10, z-score = -1.66, R) >droSec1.super_13 713351 70 + 2104621 UCUCCUCCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU .......((((((....))........(((((....)))))...))))....(((((.....)))))... ( -13.10, z-score = -1.66, R) >droYak2.chr3R 4277027 70 - 28832112 UCUCCUCCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU .......((((((....))........(((((....)))))...))))....(((((.....)))))... ( -13.10, z-score = -1.66, R) >droEre2.scaffold_4820 4345601 70 - 10470090 UCUCCUCCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU .......((((((....))........(((((....)))))...))))....(((((.....)))))... ( -13.10, z-score = -1.66, R) >droAna3.scaffold_13340 15745489 70 + 23697760 UCGCCACCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU .......((((((....))........(((((....)))))...))))....(((((.....)))))... ( -13.10, z-score = -0.82, R) >dp4.chr2 11676468 70 - 30794189 UUGCCACCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU .......((((((....))........(((((....)))))...))))....(((((.....)))))... ( -13.10, z-score = -0.96, R) >droPer1.super_3 5512990 70 - 7375914 UUGCCACCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU .......((((((....))........(((((....)))))...))))....(((((.....)))))... ( -13.10, z-score = -0.96, R) >droWil1.scaffold_181130 15559734 70 + 16660200 CCGCCACCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU .......((((((....))........(((((....)))))...))))....(((((.....)))))... ( -13.10, z-score = -0.84, R) >droMoj3.scaffold_6540 15884456 70 + 34148556 UCGCCACCGCCACCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU ..............((.(((.......(((((....)))))..))).))...(((((.....)))))... ( -12.90, z-score = -1.19, R) >droGri2.scaffold_14906 10879720 70 + 14172833 UCUCCUCCGCCGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUAGUAAACCCGUUU ..............((.(((.......(((((....)))))..))).))...(((((.....)))))... ( -12.90, z-score = -1.12, R) >consensus UCUCCUCCGACGCCGCCGCAUAAUUUUUCAUAUUUUUAUGAUUUGUUGCUACCGGGUACUAAACCCGUUU ..............((.(((.......(((((....)))))..))).))...(((((.....)))))... (-12.90 = -12.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:48 2011