Locus 11537

Sequence ID dm3.chr3R
Location 21,918,240 – 21,918,292
Length 52
Max. P 0.924224
window15851 window15852

overview

Window 1

Location 21,918,240 – 21,918,292
Length 52
Sequences 3
Columns 52
Reading direction forward
Mean pairwise identity 100.00
Shannon entropy -0.00000
G+C content 0.30769
Mean single sequence MFE -7.40
Consensus MFE -7.40
Energy contribution -7.40
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.31
SVM RNA-class probability 0.924224
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 21918240 52 + 27905053
AUAAAAUGCUUUAAAAAUUACGACGUAAGUAUCUUUGCACAUUUAAAGCCCG
.......((((((((..((((...))))(((....)))...))))))))... (  -7.40, z-score =  -1.66, R)
>droSec1.super_13 712732 52 + 2104621
AUAAAAUGCUUUAAAAAUUACGACGUAAGUAUCUUUGCACAUUUAAAGCCCG
.......((((((((..((((...))))(((....)))...))))))))... (  -7.40, z-score =  -1.66, R)
>droSim1.chr3R 21778788 52 + 27517382
AUAAAAUGCUUUAAAAAUUACGACGUAAGUAUCUUUGCACAUUUAAAGCCCG
.......((((((((..((((...))))(((....)))...))))))))... (  -7.40, z-score =  -1.66, R)
>consensus
AUAAAAUGCUUUAAAAAUUACGACGUAAGUAUCUUUGCACAUUUAAAGCCCG
.......((((((((..((((...))))(((....)))...))))))))... ( -7.40 =  -7.40 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 21,918,240 – 21,918,292
Length 52
Sequences 3
Columns 52
Reading direction reverse
Mean pairwise identity 100.00
Shannon entropy -0.00000
G+C content 0.30769
Mean single sequence MFE -9.20
Consensus MFE -9.20
Energy contribution -9.20
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.99
SVM RNA-class probability 0.867876
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 21918240 52 - 27905053
CGGGCUUUAAAUGUGCAAAGAUACUUACGUCGUAAUUUUUAAAGCAUUUUAU
...((((((((..(((...(((......))))))...))))))))....... (  -9.20, z-score =  -1.44, R)
>droSec1.super_13 712732 52 - 2104621
CGGGCUUUAAAUGUGCAAAGAUACUUACGUCGUAAUUUUUAAAGCAUUUUAU
...((((((((..(((...(((......))))))...))))))))....... (  -9.20, z-score =  -1.44, R)
>droSim1.chr3R 21778788 52 - 27517382
CGGGCUUUAAAUGUGCAAAGAUACUUACGUCGUAAUUUUUAAAGCAUUUUAU
...((((((((..(((...(((......))))))...))))))))....... (  -9.20, z-score =  -1.44, R)
>consensus
CGGGCUUUAAAUGUGCAAAGAUACUUACGUCGUAAUUUUUAAAGCAUUUUAU
...((((((((..(((...(((......))))))...))))))))....... ( -9.20 =  -9.20 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:47 2011