| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,917,416 – 21,917,521 |
| Length | 105 |
| Max. P | 0.519876 |
| Location | 21,917,416 – 21,917,521 |
|---|---|
| Length | 105 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 79.05 |
| Shannon entropy | 0.40053 |
| G+C content | 0.44730 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -9.82 |
| Energy contribution | -10.55 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21917416 105 + 27905053 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUUUCCCGGAGCGUCUUGUCUUC-UCCUCUGCUGACUUG-------ACUUGUGCGAAUUGUCUGGUUGCA-G-ACUAGAUAACUCCC ...(((((((((((.........((.((.......)).))(((..(((..(-......)..)))..)-------)))))))))))))((((((((...-)-)))))))....... ( -27.30, z-score = -2.60, R) >droAna3.scaffold_13340 15743646 113 + 23697760 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUUUCCUGGAGCGUCUUGUCUUCGUCUUCUCCUGACUUGUGUCUUGAGUUGUGCGAAUUGUCUAGUCUGA-G-ACUACAUAGAUAGC ...(((((((((((...((((..((((....((..((((.....((....))....)))).))...))))..)))))))))))))))((((......)-)-))............ ( -24.20, z-score = -0.05, R) >droEre2.scaffold_4820 4344117 104 - 10470090 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUU-CCCGGAGCGUCUUGUCUUC-UCCUCCGCUGACUUG-------ACUUGUGCGAAUUGUCUGGUCGCA-G-ACUAGAUAACUCCC ...(((((((((((.........((.((...-...)).))(((..(((..(-......)..)))..)-------)))))))))))))((((((((...-)-)))))))....... ( -28.80, z-score = -2.85, R) >droYak2.chr3R 4275478 105 - 28832112 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUUUCCCGGAGCGUCUUGUCUUC-UCCUCGGCUGACUUG-------ACUUGUGCGAAUUGUCUGGUCGCA-G-ACUAGAUAACUCCC ...(((((((((((.........((.((.......)).))(((..(((..(-(....))..)))..)-------)))))))))))))((((((((...-)-)))))))....... ( -28.90, z-score = -2.34, R) >droSec1.super_13 711913 105 + 2104621 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUUUCCCGGAGCGUCUUGUCUUC-UCCUCUGCUGACUUG-------ACUUGUGCGAAUUGUCUGGUCGCA-G-ACUAGAUAACUCCC ...(((((((((((.........((.((.......)).))(((..(((..(-......)..)))..)-------)))))))))))))((((((((...-)-)))))))....... ( -28.90, z-score = -2.96, R) >droSim1.chr3R 21777961 105 + 27517382 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUUUCCCGGAGCGUCUUGUCUUC-UCCUCUGCUGACUUG-------ACUUGUGCGAAUUGUCUGGUCGCA-G-ACUAGAUAACUCCC ...(((((((((((.........((.((.......)).))(((..(((..(-......)..)))..)-------)))))))))))))((((((((...-)-)))))))....... ( -28.90, z-score = -2.96, R) >droGri2.scaffold_14906 10877768 85 + 14172833 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUU-CCUGGAGCGACUG--------------------UG---------GUUUACGAAUUGCCUAGGCACUCGCAUUUCAUAUACCUC .((((..(((((((.......))))......-(((((.((((...--------------------((---------.....))..))))))))).....)))))))......... ( -18.30, z-score = -1.16, R) >droMoj3.scaffold_6540 15881969 85 + 34148556 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUU-CCUGGAGCGACUG--------------------CG---------GUUUACGAAUUGUCUAGGCACUCGCACUUCAUCUGCCUC .(((...(((((((.......))))......-((((((.(((...--------------------((---------.....))..))))))))).....))).)))......... ( -16.70, z-score = 0.06, R) >droPer1.super_3 5510944 96 - 7375914 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUU-CCUGGAGCGUCUUGUCUUU----------GGCUUG-------ACUUGUGCGAAUUGUCUAGUCCCCCG-ACUAGAUAUCUCUC ...(((((((((((.........((.((...-...)).))(((..((....----------.))..)-------)))))))))))))((((((((....)-)))))))....... ( -29.10, z-score = -4.25, R) >dp4.chr2 11674436 96 - 30794189 CGAAAUUUGCGCAAAUUUUUAUUGCACUUUU-CCUGGAGCGUCUUGUCUUU----------GGCUUG-------ACUUGUGCGAAUUGUCUAGUCCCCCG-ACUAGAUAUCUCUC ...(((((((((((.........((.((...-...)).))(((..((....----------.))..)-------)))))))))))))((((((((....)-)))))))....... ( -29.10, z-score = -4.25, R) >consensus CGAAAUUUGCGCAAAUUUUUAUUGCACUUUU_CCCGGAGCGUCUUGUCUUC_UCCUC_GCUGACUUG_______ACUUGUGCGAAUUGUCUAGUCGCA_G_ACUAGAUAACUCCC .(((((((((((((........(((.((.......)).)))....(((.............)))............))))))))))).))......................... ( -9.82 = -10.55 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:45 2011