Locus 11533

Sequence ID dm3.chr3R
Location 21,905,855 – 21,905,955
Length 100
Max. P 0.867115
window15846

overview

Window 6

Location 21,905,855 – 21,905,955
Length 100
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 83.94
Shannon entropy 0.25362
G+C content 0.47102
Mean single sequence MFE -22.45
Consensus MFE -17.79
Energy contribution -18.23
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -1.87
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.98
SVM RNA-class probability 0.867115
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 21905855 100 + 27905053
CAAAAAAAAACAAAAAAAACAAAAAAACUAAACCUCCCCAUCCCCCAAAAA--ACCCGUCGGAUGACGCAGACGCCACAGUCGUUUGUGGGGUUUGUUUUUC
......................((((((.((((((...(((((..(.....--....)..))))).(((((((((....).)))))))))))))))))))). ( -23.20, z-score =  -2.54, R)
>droSim1.chr3R 21757432 81 + 27517382
-------------------CAAAAAAACAAAACCUCCCGAUCCCCCAAAAA--ACCCGUCGGAUGACGCAGACGCCACAGUCGUUUGUGGGGUUUGUUUUUU
-------------------..((((((((((.(((.(((((..........--....)))))....(((((((((....).))))))))))))))))))))) ( -23.04, z-score =  -1.98, R)
>droSec1.super_13 700541 81 + 2104621
-------------------CAAAAAAACAAAACCUCCCGAUCCCCCAAAAA--ACCCGUCGGAUGACGCAGACGCCACAGUCGUUUGUGGGGUUGGUUUUUC
-------------------.................((((((((.((((..--...((((....))))..(((......))).)))).))))))))...... ( -22.20, z-score =  -1.08, R)
>droYak2.chr3R 4263864 86 - 28832112
----------------CAAAAAAAAAAAACAAACUCCCGAUCCCCCAAAAAAAACCCGUCGGAUGACGCAGACGCCACAGUCGUUUGUGGGGUUUGUUUUUC
----------------........(((((((((((((((((................)))))....(((((((((....).)))))))))))))))))))). ( -24.89, z-score =  -2.80, R)
>droEre2.scaffold_4820 4332606 83 - 10470090
----------------CAAAAAAAAAAAACAACCUCCCGAUCCCCCAAAA---ACCCGUCGGAUGACGCAGACGCCACAGUCUUUUGCGGGGUUUGCUUUUC
----------------....................(((((.........---....))))).....((((((.((.(((....))).)).))))))..... ( -18.92, z-score =  -0.96, R)
>consensus
_________________AACAAAAAAACAAAACCUCCCGAUCCCCCAAAAA__ACCCGUCGGAUGACGCAGACGCCACAGUCGUUUGUGGGGUUUGUUUUUC
....................................(((((................))))).....((((((.((((((....)))))).))))))..... (-17.79 = -18.23 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:43 2011