| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,898,745 – 21,898,845 |
| Length | 100 |
| Max. P | 0.773133 |
| Location | 21,898,745 – 21,898,845 |
|---|---|
| Length | 100 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 92.14 |
| Shannon entropy | 0.16859 |
| G+C content | 0.39949 |
| Mean single sequence MFE | -22.61 |
| Consensus MFE | -19.52 |
| Energy contribution | -19.48 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21898745 100 - 27905053 ----------GAGGACCAGGUGACUAAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACAGAGCAAUUUUA ----------.......((....))..(((((((.((......((((((..(.......((((......)))).......)..))))))(.....)...)).))))))). ( -19.54, z-score = -1.47, R) >droSim1.chr3R 21750648 100 - 27517382 ----------GAGGACCAGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACAGAGCAAUUUUA ----------......(((....))).(((((((.((......((((((..(.......((((......)))).......)..))))))(.....)...)).))))))). ( -22.54, z-score = -2.17, R) >droSec1.super_13 693216 100 - 2104621 ----------GAGGACCAGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACAGAGCAAUUUUA ----------......(((....))).(((((((.((......((((((..(.......((((......)))).......)..))))))(.....)...)).))))))). ( -22.54, z-score = -2.17, R) >droYak2.chr3R 4256586 100 + 28832112 ----------GAGGACCAGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACAGAGCAAUUUUA ----------......(((....))).(((((((.((......((((((..(.......((((......)))).......)..))))))(.....)...)).))))))). ( -22.54, z-score = -2.17, R) >droEre2.scaffold_4820 4325460 100 + 10470090 ----------GAGGACCAGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACAGAGCAAUUUUA ----------......(((....))).(((((((.((......((((((..(.......((((......)))).......)..))))))(.....)...)).))))))). ( -22.54, z-score = -2.17, R) >droAna3.scaffold_13340 15724005 110 - 23697760 GAAGAUGAGCGCGGGCCAGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACAGAGCAAUUUUA .(((((..(((((...(((....))).((......))..)))(((((((..(.......((((......)))).......)..)))))))...........)).))))). ( -24.94, z-score = -1.11, R) >dp4.chr2 11652936 110 + 30794189 GCCCCGGUCCGGGGACCAGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACAGAGCAAUUUUA .(((((...)))))..(((....))).(((((((.((......((((((..(.......((((......)))).......)..))))))(.....)...)).))))))). ( -30.44, z-score = -2.00, R) >droPer1.super_3 5489282 110 + 7375914 GCCCCUGUCCGGGGACCAGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACAGAGCAAUUUUA .((((.....))))..(((....))).(((((((.((......((((((..(.......((((......)))).......)..))))))(.....)...)).))))))). ( -29.54, z-score = -1.96, R) >droWil1.scaffold_181130 15532752 99 - 16660200 -----------GGACCCAGGUGACUGAGAAAUUGAUCAACUCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACACAGCAAUUUUA -----------.....(((....))).(((((((.........((((((..(.......((((......)))).......)..))))))(.....)......))))))). ( -20.64, z-score = -1.88, R) >droVir3.scaffold_13047 5483800 100 - 19223366 ----------CCAGACCAGGUGACUGAGAAAUUGAUCAGCGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACACAGCAAUUUUA ----------......(((....))).(((((((.........((((((..(.......((((......)))).......)..))))))(.....)......))))))). ( -20.64, z-score = -1.35, R) >droMoj3.scaffold_6540 15857945 100 - 34148556 ----------CCAGACCGGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACACAGCAAUUUUA ----------......(((....))).(((((((.........((((((..(.......((((......)))).......)..))))))(.....)......))))))). ( -19.94, z-score = -1.19, R) >droGri2.scaffold_14906 10857258 100 - 14172833 ----------CCAUACUGGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCACCACGAAAAUCACACAGCAAUUUUA ----------((.....)).(((..((....))..)))..((((((((.((.......))....))..............((((.....))))....))))))....... ( -15.50, z-score = -0.37, R) >consensus __________GAGGACCAGGUGACUGAGAAAUUGAUCAACGCUGUGGCGGGACAUAAACUAAAAGCUUAUUUAACAUUAAUUUCGCCACGAAAAUCACAGAGCAAUUUUA ................(((....))).(((((((.........((((((..(.......((((......)))).......)..))))))(.....)......))))))). (-19.52 = -19.48 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:42 2011