| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,862,039 – 21,862,143 |
| Length | 104 |
| Max. P | 0.511983 |
| Location | 21,862,039 – 21,862,143 |
|---|---|
| Length | 104 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.96 |
| Shannon entropy | 0.26472 |
| G+C content | 0.44572 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -19.61 |
| Energy contribution | -19.79 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511983 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21862039 104 - 27905053 CUUUCCACUGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGG-AGGUAGCCCGUG--------- .....(((..((...(((...(((((((((.............)))))))))..((....)))))...------))..)))..............(((-.......)))..--------- ( -24.82, z-score = -0.96, R) >droSim1.chr3R 21713464 104 - 27517382 CUUUCCACUGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGG-AGGUAGCCCGUG--------- .....(((..((...(((...(((((((((.............)))))))))..((....)))))...------))..)))..............(((-.......)))..--------- ( -24.82, z-score = -0.96, R) >droSec1.super_13 656554 104 - 2104621 CUUUCCACUGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGG-AGGUAGCCCGUG--------- .....(((..((...(((...(((((((((.............)))))))))..((....)))))...------))..)))..............(((-.......)))..--------- ( -24.82, z-score = -0.96, R) >droYak2.chr3R 4218751 104 + 28832112 CUUUCCACUGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGG-AGGUAGCCCGUG--------- .....(((..((...(((...(((((((((.............)))))))))..((....)))))...------))..)))..............(((-.......)))..--------- ( -24.82, z-score = -0.96, R) >droEre2.scaffold_4820 4286015 104 + 10470090 CUUUCCACCGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUU------GUUGGUGUUAUAAGUUAUAAUCGG-AGGUAGCCCGUG--------- .....((((((((..(((...(((((((((.............)))))))))..((....)))))..)------)))))))..............(((-.......)))..--------- ( -30.62, z-score = -2.91, R) >droAna3.scaffold_13340 12416365 104 + 23697760 CUUUCCACCGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGG-AGGUAAUCCGUG--------- .....(((((((...(((...(((((((((.............)))))))))..((....)))))...------)))))))..............(((-(.....))))..--------- ( -29.62, z-score = -2.84, R) >dp4.chr2 11611137 104 + 30794189 UUUUAGCCUGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGG-AGGUAGGGAGCG--------- ......((((...(((((...(((((((((.............)))))))))..(((((....((((.------...))))....)))))....))))-)..)))).....--------- ( -27.52, z-score = -1.08, R) >droPer1.super_3 5447077 104 + 7375914 UUUUAGCCUGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGG-AGGUAGGGAGCG--------- ......((((...(((((...(((((((((.............)))))))))..(((((....((((.------...))))....)))))....))))-)..)))).....--------- ( -27.52, z-score = -1.08, R) >droWil1.scaffold_181130 15491199 100 - 16660200 UUUUACACUGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUCCGCUCGUUUGGUGUUAUAAGUUAUAAUCGG-AG------------------- .............(((((...(((((((((.............)))))))))..(((((.....((.(((......))).))...)))))....))))-).------------------- ( -21.22, z-score = -0.96, R) >droVir3.scaffold_13047 5446572 114 - 19223366 UUUUACAUUGAGGUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGGCCGGCCGUGUAGGGUGAGAGAG .....................(((((((((.............)))))))))......((((((((((------((((((((((((...))))))..))))))......)))))))))). ( -32.62, z-score = -1.29, R) >droMoj3.scaffold_6540 15819874 114 - 34148556 UUUUACAUUGACGUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGCUCGGCCGUGUAGGGUGAGCGAG ....((((..(((..(((...(((((((((.............)))))))))..((....)))))..)------))..))))............(((((((.((.....)).))))))). ( -42.22, z-score = -4.56, R) >droGri2.scaffold_14906 10821454 114 - 14172833 UUUUACAUUGACGUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC------GUUGGUGUUAUAAGUUAUAAUCGCUCGGUCUUCUAGGGUGCAAGAG ....((((..(((..(((...(((((((((.............)))))))))..((....)))))..)------))..)))).............(((((.........)))))...... ( -30.42, z-score = -1.91, R) >consensus CUUUACACUGACAUUCGAAUCGUGGGAAACACUUUGCCCUCAAGUUUCCCACAAGAUUUUUCUCGCUC______GUUGGUGUUAUAAGUUAUAAUCGG_AGGUAGCCCGUG_________ .....(((((((.........(((((((((.............))))))))).(((....)))...........)))))))....................................... (-19.61 = -19.79 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:40 2011