| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,699,678 – 8,699,779 |
| Length | 101 |
| Max. P | 0.566211 |
| Location | 8,699,678 – 8,699,779 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 86.60 |
| Shannon entropy | 0.26091 |
| G+C content | 0.38308 |
| Mean single sequence MFE | -21.18 |
| Consensus MFE | -13.88 |
| Energy contribution | -13.43 |
| Covariance contribution | -0.45 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8699678 101 + 23011544 --------------AGCCUGCGG--CGCCUGUAUUAUUACCGCCUAGUGCAAAACACUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA --------------.(((((.((--((...(((....)))))))))).))..............((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -20.80, z-score = -2.19, R) >droEre2.scaffold_4929 9291790 101 + 26641161 --------------AGCCUGCGG--CGCCUGUAUUAUUACCGCCUAGUGCAAAACACUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA --------------.(((((.((--((...(((....)))))))))).))..............((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -20.80, z-score = -2.19, R) >droYak2.chr2L 11348243 101 + 22324452 --------------AGCCUGCGG--CGCCUGUAUUAUUACCGCCUAGUGCAAAACACUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA --------------.(((((.((--((...(((....)))))))))).))..............((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -20.80, z-score = -2.19, R) >droSec1.super_3 4181416 101 + 7220098 --------------AGCCUGCGG--CGCCUGUAUUAUUACCGCCUAGUGCAAAACACUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA --------------.(((((.((--((...(((....)))))))))).))..............((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -20.80, z-score = -2.19, R) >droSim1.chr2L 8484919 101 + 22036055 --------------AGCCUGCGG--CGCCUGUAUUAUUACCGCCUAGUGCAAAACACUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA --------------.(((((.((--((...(((....)))))))))).))..............((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -20.80, z-score = -2.19, R) >dp4.chr4_group5 1474560 117 - 2436548 AGCCUGCGGUGCUGCCUCUGCGGGCUGUAUGUAUUAUUACCGCCUAGUGCAAAACACUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA (((((((((........)))))))))...(((((((........))))))).............((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -29.20, z-score = -2.23, R) >droPer1.super_5 1446391 117 - 6813705 AGCCUGCGGUGCUGCCUCUGCGGGCUGUAUGUAUUAUUACCGCCUAGUGCAAAACACUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA (((((((((........)))))))))...(((((((........))))))).............((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -29.20, z-score = -2.23, R) >droAna3.scaffold_12916 10345948 101 + 16180835 --------------AGCCUGCGG--UGUCUGUAUUAUUACCGCCUAGUGCAAAACACUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA --------------......(((--(((.(((((((........)))))))..)))))).....((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -20.80, z-score = -2.25, R) >droWil1.scaffold_181071 1138386 101 + 1211509 --------------CUCUGGCUUCUAC--UGUAUUAUAACCGCCUAGUGCAAAACAUUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA --------------....(((......--............)))((((.(((....))))))).((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -14.17, z-score = -1.31, R) >droVir3.scaffold_12723 4674545 104 + 5802038 -----------GU-CUCUCGGUGCU-CUAUGUAUUAUAACCGCCCAGUGCGAAACACUGACUAAACCUCAAAUAAUGUUCUCAGCACGUACUAACUGUCUUAAUAUUAUUUGUUGUA -----------..-....((((...-............))))..(((((.....))))).....((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -18.26, z-score = -1.45, R) >droMoj3.scaffold_6500 10640981 107 + 32352404 ----------GGUACUCUCGGUGCUUCUAUGUAUUAUAACCGCCCAGUGCGAAACACUGACUAAACCUCAAAUAAUGUUCUCAGCACGUACUAACUGUCUUAAUAUUAUUUGUUGUA ----------(((......(((((......)))))......)))(((((.....))))).....((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -19.90, z-score = -1.19, R) >droGri2.scaffold_15126 3624602 104 + 8399593 -----------GU-CUCUCGGUGCU-CUAUGUAUUAUAACCGCACAGUGCGAAACACUGACUAAACCUCAAAUAAUGUUCUCAGCACGUACUAACUGUCUUAAUAUUAUUUGUUGUA -----------((-(.....((((.-...............))))((((.....)))))))...((..(((((((((((....(((.((....)))))...)))))))))))..)). ( -18.59, z-score = -1.16, R) >consensus ______________AGCCUGCGG__CGUCUGUAUUAUUACCGCCUAGUGCAAAACACUGACUAAACCUCAAAUAAUGUUCUCAACACGUACUAACUGUCUUAAUAUUAUUUGUUGUA ............................................(((((.....))))).....((..(((((((((((....(((.((....)))))...)))))))))))..)). (-13.88 = -13.43 + -0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:39 2011