| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,857,352 – 21,857,421 |
| Length | 69 |
| Max. P | 0.992036 |
| Location | 21,857,352 – 21,857,421 |
|---|---|
| Length | 69 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 92.38 |
| Shannon entropy | 0.10495 |
| G+C content | 0.35397 |
| Mean single sequence MFE | -11.07 |
| Consensus MFE | -11.02 |
| Energy contribution | -10.80 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.34 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.992036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21857352 69 - 27905053 -AAAAAACAAAAAAAAUACAAGAGAAAUCGGUGCUUGAUUGCAAUGUAAAAGUGCUGAAGAUCCUCUCCU -...................((((...((((..(((..((((...)))))))..)))).....))))... ( -11.20, z-score = -1.75, R) >droSim1.chr3R 21708831 70 - 27517382 UAAAAACCAAAAGAAAUACAAGAGAAAUCGGUACUUGAUUGCAAUGUAAAAGUGCUGAAGACCCUCCCCU .....................(((...(((((((((..((((...))))))))))))).....))).... ( -11.00, z-score = -2.60, R) >droSec1.super_13 651928 70 - 2104621 UAAAAACCAAAAAUAUUACAAGAGAAAUCGGUACUUGAUUGCAAUGUAAAAGUGCUGAAGACCCUCCCCU .....................(((...(((((((((..((((...))))))))))))).....))).... ( -11.00, z-score = -2.68, R) >consensus UAAAAACCAAAAAAAAUACAAGAGAAAUCGGUACUUGAUUGCAAUGUAAAAGUGCUGAAGACCCUCCCCU .....................(((...(((((((((..((((...))))))))))))).....))).... (-11.02 = -10.80 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:39 2011