| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,846,859 – 21,846,921 |
| Length | 62 |
| Max. P | 0.998777 |
| Location | 21,846,859 – 21,846,921 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 98.71 |
| Shannon entropy | 0.02329 |
| G+C content | 0.54516 |
| Mean single sequence MFE | -30.02 |
| Consensus MFE | -29.80 |
| Energy contribution | -30.00 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -5.66 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.24 |
| SVM RNA-class probability | 0.998020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21846859 62 + 27905053 CAAAGCUGCAGAUACAGAUACAUUUGUAUCUGCGGCGGGGCACGCUCUCGCUCGCUCCCAUU ....((((((((((((((....))))))))))))))(((((..((....))..)).)))... ( -31.10, z-score = -6.05, R) >droSim1.chr3R 21698002 62 + 27517382 CAAAGCUGCAGAUACAGAUACAUUUGUAUCUGCGGCGGGGCACGCUCUCGCUCGCUCCCAUU ....((((((((((((((....))))))))))))))(((((..((....))..)).)))... ( -31.10, z-score = -6.05, R) >droSec1.super_13 641377 62 + 2104621 CAAAGCUGCAGAUACAGAUACAUUUGUAUCUGCGGCGGGGCACGCUCUCGCUCGCUCCCAUU ....((((((((((((((....))))))))))))))(((((..((....))..)).)))... ( -31.10, z-score = -6.05, R) >droYak2.chr3R 4203033 62 - 28832112 CAAUGCUGCAGAUACAGAUACAUUUGUAUCUGCGGCGGGGCACGCUCUCGCUCGCUCCCAUU ....((((((((((((((....))))))))))))))(((((..((....))..)).)))... ( -30.90, z-score = -5.85, R) >droEre2.scaffold_4820 4270438 62 - 10470090 CAAAGCUGCAGAUACAGAUACAUUUGUAUCUGCGGCGAGGCACGCUCUCGCUCGCUCCCAUU ...(((.(((((((((((....)))))))))))(((((((....).)))))).)))...... ( -25.90, z-score = -4.29, R) >consensus CAAAGCUGCAGAUACAGAUACAUUUGUAUCUGCGGCGGGGCACGCUCUCGCUCGCUCCCAUU ....((((((((((((((....))))))))))))))(((((..((....))..))))).... (-29.80 = -30.00 + 0.20)
| Location | 21,846,859 – 21,846,921 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 98.71 |
| Shannon entropy | 0.02329 |
| G+C content | 0.54516 |
| Mean single sequence MFE | -29.16 |
| Consensus MFE | -29.26 |
| Energy contribution | -29.10 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -4.72 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.49 |
| SVM RNA-class probability | 0.998777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21846859 62 - 27905053 AAUGGGAGCGAGCGAGAGCGUGCCCCGCCGCAGAUACAAAUGUAUCUGUAUCUGCAGCUUUG ...(((.(((.((....)).))))))((.(((((((((........))))))))).)).... ( -29.60, z-score = -4.96, R) >droSim1.chr3R 21698002 62 - 27517382 AAUGGGAGCGAGCGAGAGCGUGCCCCGCCGCAGAUACAAAUGUAUCUGUAUCUGCAGCUUUG ...(((.(((.((....)).))))))((.(((((((((........))))))))).)).... ( -29.60, z-score = -4.96, R) >droSec1.super_13 641377 62 - 2104621 AAUGGGAGCGAGCGAGAGCGUGCCCCGCCGCAGAUACAAAUGUAUCUGUAUCUGCAGCUUUG ...(((.(((.((....)).))))))((.(((((((((........))))))))).)).... ( -29.60, z-score = -4.96, R) >droYak2.chr3R 4203033 62 + 28832112 AAUGGGAGCGAGCGAGAGCGUGCCCCGCCGCAGAUACAAAUGUAUCUGUAUCUGCAGCAUUG ...(((.(((.((....)).))))))((.(((((((((........))))))))).)).... ( -30.10, z-score = -5.19, R) >droEre2.scaffold_4820 4270438 62 + 10470090 AAUGGGAGCGAGCGAGAGCGUGCCUCGCCGCAGAUACAAAUGUAUCUGUAUCUGCAGCUUUG ....((((((.(((((.(....)))))))(((((((((........))))))))).))))). ( -26.90, z-score = -3.51, R) >consensus AAUGGGAGCGAGCGAGAGCGUGCCCCGCCGCAGAUACAAAUGUAUCUGUAUCUGCAGCUUUG ...(((.(((.((....)).))))))((.(((((((((........))))))))).)).... (-29.26 = -29.10 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:36 2011