| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,835,612 – 21,835,703 |
| Length | 91 |
| Max. P | 0.964536 |
| Location | 21,835,612 – 21,835,703 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.28 |
| Shannon entropy | 0.45667 |
| G+C content | 0.51867 |
| Mean single sequence MFE | -27.93 |
| Consensus MFE | -20.41 |
| Energy contribution | -21.73 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21835612 91 - 27905053 CGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGAGGGAUUACCCGAUAAGGCGCAGGGAG---------------------- ...(((...((((((...(.(.((((((((((..((((....))))..)))))))))).).)...(((....))).....)))))))))..---------------------- ( -30.50, z-score = -2.30, R) >droSim1.chr3R 21687340 91 - 27517382 CGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGAGGGAUUACCCGAUAAGGCGCAGGGAG---------------------- ...(((...((((((...(.(.((((((((((..((((....))))..)))))))))).).)...(((....))).....)))))))))..---------------------- ( -30.50, z-score = -2.30, R) >droSec1.super_13 623220 91 - 2104621 CGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGAGGGAUUACCCGAUAAGGCGCAGGGAG---------------------- ...(((...((((((...(.(.((((((((((..((((....))))..)))))))))).).)...(((....))).....)))))))))..---------------------- ( -30.50, z-score = -2.30, R) >droYak2.chr3R 4188235 91 + 28832112 CGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUACUUCAAUAUCGCUUCAAGGGAGUGGGAUUACCCGAUAAGGCGCAGGGAG---------------------- ...(((...((((((...(.(.((((((((((..((((....))))..)))))))))).).)..((((....))))....)))))))))..---------------------- ( -36.20, z-score = -3.60, R) >droEre2.scaffold_4820 4259037 91 + 10470090 CGGCCCAAGUGUGCUGGACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGUGGGAUUACCCGAUAAGGCGCAGGGAG---------------------- ...(((...((((((...(.(.((((((((((..((((....))))..)))))))))).).)..((((....))))....)))))))))..---------------------- ( -30.50, z-score = -1.97, R) >droAna3.scaffold_13340 12388094 76 + 23697760 CGGCCCAAGUGUGCUGAAAGUGUGGAGCGAUAGGGAGGUUUU--------UUAUUUCG-------GGGAUUACUCGAUAAGGCGCAGGAAU---------------------- ....((...((((((.....(((.(((..((...(((((...--------..))))).-------...))..))).))).))))))))...---------------------- ( -17.00, z-score = 0.25, R) >droWil1.scaffold_181130 15458385 111 - 16660200 GGGUCCAAGUGUGCUGAAAGUGUGAGGGUUUUAGUUUCGUUUUUUC--UUUUUUGUCGACUGAUAAACUCGAUUGGAAUGGGCAUGAGGAAUAUAGGAAUAUAGGGAGCAAAC .(.(((..(((((((((((.(.....).))))))).((.(...(((--(((..((((.((..((.......))..)..).)))).))))))...).))))))..))).).... ( -20.30, z-score = 0.97, R) >consensus CGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGAGGGAUUACCCGAUAAGGCGCAGGGAG______________________ ...(((...((((((.......((((((((((..((((....))))..)))))))))).......(((....))).....)))))))))........................ (-20.41 = -21.73 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:27 2011