| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,698,525 – 8,698,642 |
| Length | 117 |
| Max. P | 0.880160 |
| Location | 8,698,525 – 8,698,642 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.73 |
| Shannon entropy | 0.25444 |
| G+C content | 0.35546 |
| Mean single sequence MFE | -30.34 |
| Consensus MFE | -20.50 |
| Energy contribution | -21.74 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.880160 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8698525 117 - 23011544 AAUACUUUAUAGAUUACGCAGAUUACGGCGAUUAGAAGUAAUCUCAAACCAAUGGGGGUAAUGGGCCUUGUUGGU-GGUUAAUUAAAAAUGCGUAGUUUUGGCGAUAAUCGACUUUCA-- ..........((((((((((((((((..(.....)..))))))....(((((..(((.(....).)))..)))))-.............)))))))))).((((.....)).))....-- ( -30.80, z-score = -2.15, R) >droSim1.chr2L 8483760 115 - 22036055 AAUACUUUAUAGAUUGCGCAGAUUAUUGCGAUUAGGAGUAAUCUUAAACCAAUGGGGGUAA--GGCCUUGUUGGU-GGUUAAUUAAAAAUGCGUAGUUUUGGCGAUAAUCUACUUUUA-- .........((((((((((.....((((((.((((((....))))))(((((..(((....--..)))..)))))-...............))))))....))).)))))))......-- ( -34.20, z-score = -3.49, R) >droSec1.super_3 4180272 115 - 7220098 AAUACUUUAUAGAUUGCGCAGAUUGUUGCGAUUAGGAGUAAUCUUAAACCAAU-GGGGUAA--GGCCUUGUUGGU-GGUUAAUUAAAAAUGCGUAG-UUUGGCGAUAAUCUACUUUUUUA .........((((((((((((((...((((.((((((....))))))(((((.-.(((...--..)))..)))))-.............))))..)-))).))).)))))))........ ( -32.80, z-score = -3.02, R) >droYak2.chr2L 11347117 106 - 22324452 AAUACUUUAUAGAUUAAGCA-------GUGAUUAGGAGUAAUCUUAAACCAAUGGGGGUAA--GGCCUUGUUAGUGGGGUAAUUAGAAAUGCCUAGUUUUUGCAAUAAGCUACAU----- .................(((-------(.(((((((......((((..((....))..)))--)(((((......)))))...........))))))).))))............----- ( -23.20, z-score = -0.17, R) >droEre2.scaffold_4929 9290600 115 - 26641161 AAUACUUUAUAGAUAACGCAGAUUAUUGCGAUUAGGAGUAAUCGUAAACCAAUGGGGGUAA--GGCCUUGUUGGU-GGUUAAUUAAAAGUGCGAAUUUUUGGCGAUAAUCUACAUACA-- .................(.((((((((((..(((.((....)).)))(((((..(((....--..)))..)))))-.......(((((((....))))))))))))))))).).....-- ( -30.70, z-score = -2.76, R) >consensus AAUACUUUAUAGAUUACGCAGAUUAUUGCGAUUAGGAGUAAUCUUAAACCAAUGGGGGUAA__GGCCUUGUUGGU_GGUUAAUUAAAAAUGCGUAGUUUUGGCGAUAAUCUACUUUCA__ .........((((((((((.......((((.((..((.(((((....((((((((((........)))))))))).))))).))..)).))))........))).)))))))........ (-20.50 = -21.74 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:38 2011