| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,834,196 – 21,834,288 |
| Length | 92 |
| Max. P | 0.572133 |
| Location | 21,834,196 – 21,834,288 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.55 |
| Shannon entropy | 0.25330 |
| G+C content | 0.46887 |
| Mean single sequence MFE | -27.25 |
| Consensus MFE | -21.67 |
| Energy contribution | -21.70 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21834196 92 - 27905053 ----------------------------GACGACUGCUGACUUGGCUGGCUGCUUUUCGCGGCGCAAUAAAGUUGAAAGCGCACUGUUGGAUAUAAAUUAAUUCAACAACACGCUAUGGC ----------------------------..((((((((.....)))(((((((.....))))).))....)))))..((((...((((((((........))))))))...))))..... ( -26.20, z-score = -1.85, R) >droGri2.scaffold_14906 10790670 89 - 14172833 ---------------------------UGACG-CUGCUGGCU---GUGGCUGCUUUUCGCGGCGCAAUAAAGUUGAAAGCGCACUGUUGGAUAUAAAUUAAUUCAACAACACGCUAUAGU ---------------------------((.((-((((.(((.---......)))....))))))))...........((((...((((((((........))))))))...))))..... ( -24.80, z-score = -0.59, R) >droVir3.scaffold_13047 5413396 118 - 19223366 UGACGCUGCUGGCUCUGCUCUGACUGUGGCU--CUGGCUCUGGCUGUGGCUGCUUUUCGCGGCGCAAUAAAGUUGAAAGCGCACUGUUGGAUAUAAAUUAAUUCAACAACACGCUAUAGU ((.((((((.(((...)))..((..(..(((--..(((....)))..)))..)...))))))))))...........((((...((((((((........))))))))...))))..... ( -34.50, z-score = -0.42, R) >droAna3.scaffold_13340 12386411 92 + 23697760 --------------------------GAGCU--CUGCUGACUGGGCUGGCUGCUUUUCGCGGCGCAAUAAAGUUGAAAGCGCACUGUUGGAUAUAAAUUAAUUCAACAACACGCUAUAGU --------------------------.((((--(........))))).(((((.....)))))..............((((...((((((((........))))))))...))))..... ( -25.70, z-score = -0.93, R) >droEre2.scaffold_4820 4257567 93 + 10470090 ---------------------------GGCCGACUGCUGACUUGGCUGGCUGCUUUUCGCGGCGCAAUAAAGUUGAAAGCGCACUGUUGGAUAUAAAUUAAUUCAACAACACGCUAUGGC ---------------------------.((((......(((((...(((((((.....))))).))...)))))...((((...((((((((........))))))))...)))).)))) ( -28.20, z-score = -1.70, R) >droYak2.chr3R 4186759 92 + 28832112 ----------------------------GACGACUGCUGACUUGGCUGGCUGCUUUUCGCGGCGCAAUAAAGUUGAAAGCGCACUGUUGGAUAUAAAUUAAUUCAACAACACGCUAUGGC ----------------------------..((((((((.....)))(((((((.....))))).))....)))))..((((...((((((((........))))))))...))))..... ( -26.20, z-score = -1.85, R) >droSec1.super_13 621802 92 - 2104621 ----------------------------GACGACUGCUGACUUGGCUGGCUGCUUUUCGCGGCGCAAUAAAGUUGAAAGCGCACUGUUGGAUAUAAAUUAAUUCAACAACACGCUAUGGC ----------------------------..((((((((.....)))(((((((.....))))).))....)))))..((((...((((((((........))))))))...))))..... ( -26.20, z-score = -1.85, R) >droSim1.chr3R 21685934 92 - 27517382 ----------------------------GACGACUGCUGACUUGGCUGGCUGCUUUUCGCGGCGCAAUAAAGUUGAAAGCGCACUGUUGGAUAUAAAUUAAUUCAACAACACGCUAUGGC ----------------------------..((((((((.....)))(((((((.....))))).))....)))))..((((...((((((((........))))))))...))))..... ( -26.20, z-score = -1.85, R) >consensus ____________________________GACGACUGCUGACUUGGCUGGCUGCUUUUCGCGGCGCAAUAAAGUUGAAAGCGCACUGUUGGAUAUAAAUUAAUUCAACAACACGCUAUGGC ...................................(((((((....(((((((.....))))).))....))))...((((...((((((((........))))))))...))))..))) (-21.67 = -21.70 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:26 2011