| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,809,143 – 21,809,199 |
| Length | 56 |
| Max. P | 0.911998 |
| Location | 21,809,143 – 21,809,199 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 95.89 |
| Shannon entropy | 0.07605 |
| G+C content | 0.63929 |
| Mean single sequence MFE | -13.42 |
| Consensus MFE | -12.32 |
| Energy contribution | -12.24 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21809143 56 + 27905053 UCCUCCCCCACACAUGCUCACAGCGACCUUGCGAGUGUGCGUGCCUCACCCGCUCU ........(((.(((((((.(((.....))).))))))).)))............. ( -13.30, z-score = -1.46, R) >droSim1.chr3R 21657004 56 + 27517382 UCCUCCCCCACACAUGCUCACUGCGACCUUGCGAGUGUGCGUGCCUCACCCGCUCU ............(((((.(((((((....))).)))).)))))............. ( -13.70, z-score = -1.97, R) >droSec1.super_13 596626 56 + 2104621 UCCUCCCCCACACAUGCUUACUGCGACCUUGCGAGUGUGCGUGCCUCACCCGCUCU ............(((((.(((((((....))).)))).)))))............. ( -11.20, z-score = -1.27, R) >droYak2.chr3R 4161280 56 - 28832112 UCCUUCCCCACACAUGCUCACCGCGACCUUGCGAGUGUGCGUGCCUCACCCGCUCU ............(((((.(((((((....)))).))).)))))............. ( -15.20, z-score = -2.68, R) >droEre2.scaffold_4820 4231434 56 - 10470090 UCCUCCCCCAUACAUGCUCACUGCGACCUUGCGAGUGUGCGUGCCUCACCCGCUCC ............(((((.(((((((....))).)))).)))))............. ( -13.70, z-score = -2.46, R) >consensus UCCUCCCCCACACAUGCUCACUGCGACCUUGCGAGUGUGCGUGCCUCACCCGCUCU ............(((((.(((((((....)))).))).)))))............. (-12.32 = -12.24 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:25 2011