| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,749,255 – 21,749,352 |
| Length | 97 |
| Max. P | 0.620795 |
| Location | 21,749,255 – 21,749,352 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 93.34 |
| Shannon entropy | 0.13505 |
| G+C content | 0.28647 |
| Mean single sequence MFE | -17.69 |
| Consensus MFE | -13.39 |
| Energy contribution | -14.43 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21749255 97 + 27905053 AAUUAUGAAAUAAAUAUUAGCUUAAACCAAAUUGACUACAACGUUAUGCUCUAUUAACUCUUAUGGUCUACUUAUGCUUAAUGGGUUUUGGUUUAAG ....................(((((((((((..(((((.((.((((........))))..)).))))).((((((.....))))))))))))))))) ( -19.20, z-score = -2.79, R) >droSim1.chr3R 21594586 97 + 27517382 AAUUAUGAAAUAAAUAUUAGCUUAAACCAAAUUGACUACAACGUUAUGCUCUAUUAACUCUUAUGGUCUACUUAUGCUUAAUGGGUUUUGGUUUAAG ....................(((((((((((..(((((.((.((((........))))..)).))))).((((((.....))))))))))))))))) ( -19.20, z-score = -2.79, R) >droSec1.super_13 533069 97 + 2104621 AAUUAUGAAAUAAAUAUUAGCUUAAACCAAAUUGACUACAACGUUAUGCUCUAUUAACUCUUAUGGUCUACUUAUGCUUAAUGGGUUUUGGUUUAAG ....................(((((((((((..(((((.((.((((........))))..)).))))).((((((.....))))))))))))))))) ( -19.20, z-score = -2.79, R) >droYak2.chr3R 4100546 97 - 28832112 GAUUAUGAAAUAAAUAUUAGCUUAAACCAAAUUGACUACAGCGUUAUGCUCUAUUAACUCUUAUGGUCUACUUAUGCUUAAUGGGUUUUGGUUUAAG ....................(((((((((((..(((((.((.((((........)))).))..))))).((((((.....))))))))))))))))) ( -20.80, z-score = -2.60, R) >droEre2.scaffold_4820 4170819 97 - 10470090 AAUUAUGAAAUAAAUAUUAGCUUAAACCAAAUUGACUACAACGUUAUGCUCUAUUAACUCUUAUGGUCUACUUAUGCUUAAUGGGUUUUGGUUUAAG ....................(((((((((((..(((((.((.((((........))))..)).))))).((((((.....))))))))))))))))) ( -19.20, z-score = -2.79, R) >droAna3.scaffold_13340 12299856 96 - 23697760 AAUGAUGAAAUAAAUAUUAGCUUAAACCAAAUUGACUAAAACGUUAUGCUCGUUUAACUCUUACGGUCUACUUAUG-UCAAUAGGUUUUGGUUUAGG ....................(((((((((((..((((.....((((........))))......)))).((((((.-...))))))))))))))))) ( -18.00, z-score = -1.58, R) >dp4.chr2 11487393 97 - 30794189 AAUUAUGAAAUAAAUAUUAGCUUAAACCAAAUUGACUACAACUUUAUGCUCUAUUAACUCUUAGGACCUACUUAUGCCUAAUAGAAUUUGGUUUCAG ....................((.((((((((((.....((......)).........((.(((((.(........)))))).)))))))))))).)) ( -12.10, z-score = -0.82, R) >droPer1.super_3 5322783 97 - 7375914 AAUUAUGAAAUAAAUAUUAGCUUAAACCAAAUUGACUACAACUUUAUGCGCUAUUAACUCUUAGGGCCUACUUAUGCCUAAUAGAAUUUGGUUUCAG ....................((.((((((((((..............((.(((........))).))....((((.....)))))))))))))).)) ( -13.80, z-score = -0.44, R) >consensus AAUUAUGAAAUAAAUAUUAGCUUAAACCAAAUUGACUACAACGUUAUGCUCUAUUAACUCUUAUGGUCUACUUAUGCUUAAUGGGUUUUGGUUUAAG ....................(((((((((((..((((.....((((........))))......)))).((((((.....))))))))))))))))) (-13.39 = -14.43 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:24 2011