| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,740,831 – 21,740,922 |
| Length | 91 |
| Max. P | 0.585145 |
| Location | 21,740,831 – 21,740,922 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 66.10 |
| Shannon entropy | 0.69350 |
| G+C content | 0.45101 |
| Mean single sequence MFE | -21.11 |
| Consensus MFE | -9.70 |
| Energy contribution | -9.07 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21740831 91 + 27905053 -----------AUCCCACAGAUGCUCUGGCUUCCUGUUGCGCUUUAUGUACCGGCCAUCACCUACAAUCAAGGUGAGUUUGAUUUUCGAUUAAGCAUAAUAA-- -----------.........(((((.(((((....(.((((.....)))).))))))((((((.......))))))................))))).....-- ( -17.20, z-score = 0.10, R) >droSim1.chr3R 21586108 91 + 27517382 -----------AACCCACAGAUGCUCUGGCUUCCUGUUGCGCUUUAUUUACCGGCCAUCACCUACAAUCAAGGUGAGUUUAAUUUUCGAUUAAGCAUAAUAA-- -----------...((.(((.....)))((........))............))...((((((.......))))))((((((((...)))))))).......-- ( -17.00, z-score = -0.65, R) >droSec1.super_13 524642 91 + 2104621 -----------AACCCACAGAUGCUCUGGCUUCCUGUUGCGCUUUAUGUACCGGCCAUCACCUACAAUCAAGGUGAGUUUAAUUUUCGAUUAAGCAUAAUAA-- -----------.........(((((.(((((....(.((((.....)))).))))))((((((.......))))))................))))).....-- ( -17.20, z-score = -0.29, R) >droYak2.chr3R 4091989 93 - 28832112 -----------AACCCACAGAUGCUCUGGCUUCCUGUAGCGCUGUAUGUACCGGCCAUCACCUACAAUCAAGGUGAGUUUGGUUUUAUAUUAAGCAUGUUAUGC -----------.....((((..((....))...)))).((...(((((.(((((...((((((.......))))))..)))))..)))))...))......... ( -22.90, z-score = -0.24, R) >droEre2.scaffold_4820 4162354 92 - 10470090 ------------CCCCACAGAUGCUGUGGCUUCCUGUGGCGCUAUAUGUACCGGCCAUCACUUACAAUCAAGGUGAGUUUGAUUUUCGAUUAAGCAGGUUAUGC ------------..((((((..((....))...)))))).............((((.((((((.......))))))((((((((...)))))))).)))).... ( -23.60, z-score = -0.14, R) >droAna3.scaffold_13340 12289202 88 - 23697760 CUACGCUUCAUACUUCUCAGAUACUCUGGCUACCUGUGGUUUUGUAUGUACCAGCCAUAACCUUUAGCCAAGGUGAGUUUGAUAAACA---------------- ................((((((((..((((((..(((((((..((....)).))))))).....))))))..))..))))))......---------------- ( -19.30, z-score = -0.64, R) >dp4.chr2 11474558 90 - 30794189 -----------CUCCCGCAGAUGCUCUGGUUGCCUGUCGCCAUUUACGUCCCGGCUAUCACCUAUAACCAGGGUGAGUUUUAUUUUUC-UAGUGCAUCAGCA-- -----------.....((.(((((.((((..(((.(.((.......)).)..)))..((((((.......))))))...........)-))).))))).)).-- ( -26.20, z-score = -2.20, R) >droPer1.super_3 5309773 90 - 7375914 -----------CUCCCGCAGAUGCUCUGGUUGCCUGUAGCCAUUUACGUCCCGGCUAUCACCUAUAACCAGGGUGAGUGUUAUUUUUC-UAGGGCAUCAGCA-- -----------.....((.((((((((((.......(((((...........)))))((((((.......))))))...........)-))))))))).)).-- ( -30.80, z-score = -2.35, R) >droWil1.scaffold_181130 2382130 93 - 16660200 -----------AUUUCACAGAUGCUUUGGCUACCAGUGGGCUUGUAUGUAGCAGCUAUUACCUAUAGUCAGGGUGAGUUAGAGCCUUUGGUUUAUGGUUAACAA -----------......((((.((((((((((((....((((.(((.((((......)))).)))))))..))).))))))))).))))............... ( -24.10, z-score = 0.07, R) >droVir3.scaffold_13047 5297930 69 + 19223366 -----------UAUAUACAGAUGCUUUGGCUACCUGUGGCCCUCUACAUGCCUGCCAUCACCUAUAAUCAAGGUGAGUUU------------------------ -----------...............((((..(.(((((....))))).)...))))((((((.......))))))....------------------------ ( -16.00, z-score = -0.61, R) >droGri2.scaffold_14906 10689397 69 + 14172833 -----------UAUAUGCAGAUGGUCUGGCUGCCUGUUGUUCUGUAUGUGCCUGCCAUCGCCUACAAUCAAGGUGAGUUU------------------------ -----------((((((((((.(((......)))......)))))))))).......((((((.......))))))....------------------------ ( -17.90, z-score = -0.28, R) >consensus ___________AACCCACAGAUGCUCUGGCUUCCUGUGGCGCUUUAUGUACCGGCCAUCACCUACAAUCAAGGUGAGUUUGAUUUUCG_UUAAGCAU_AUAA__ ..........................(((((.....................)))))((((((.......))))))............................ ( -9.70 = -9.07 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:23 2011