| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,714,781 – 21,714,910 |
| Length | 129 |
| Max. P | 0.651466 |
| Location | 21,714,781 – 21,714,910 |
|---|---|
| Length | 129 |
| Sequences | 5 |
| Columns | 131 |
| Reading direction | forward |
| Mean pairwise identity | 73.79 |
| Shannon entropy | 0.41967 |
| G+C content | 0.38795 |
| Mean single sequence MFE | -35.05 |
| Consensus MFE | -15.58 |
| Energy contribution | -18.54 |
| Covariance contribution | 2.96 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651466 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21714781 129 + 27905053 GAGUGGGUGUGUGUGGGCUACGCCGCAAGUUUGUUUUCGUUU--ACUUUUAAUUGCCGAGAAAAAGGAUUAAUUGUGGCACUGAAAAUGCGUGUUACUUAAUGUAAUGUGCAAACAUGCGUAAAUAUUCAU (((((..((((((((......(((((((((((.((((((...--............))))))...))))...)))))))........((((..((((.....))))..))))..))))))))..))))).. ( -35.56, z-score = -1.54, R) >droSec1.super_13 498108 129 + 2104621 GAGUGGGUGUGUGUGGGCUACGCCGCAAGUUUGUUUUCGUUU--GCUUUUAAUUGCCGAGAAAAAGGAUUAAUUGUGGCAAUGAAAAUGCGUGUUACUUAAUGUAAUGUGCAAACAUGCGUAAAUAUUCAU (((((((((((.(....)))))))(((.(((((((((((((.--(((..((((((((........))..)))))).))))))))))))(((..((((.....))))..))))))).))).....))))).. ( -39.00, z-score = -2.59, R) >droSim1.chr3R 21559523 129 + 27517382 GAGUGGGUGUGUGUGGGCUACGCCGCAAGUUUGUUUUCGUUU--GCUUUUAAUUGCCGAGAAAAAGGAUUAAUUGUGGCACUGAAAAUGCGUGUUACUUACUGUAAUGUGCAAACAUGCGUAAAUAUUCAU (((((..((((((((......((((((((((..(((((.((.--((........)).)))))))..)))...)))))))........((((..((((.....))))..))))..))))))))..))))).. ( -38.20, z-score = -1.90, R) >dp4.chr2 11445441 109 - 30794189 ------GCGUGUGUGUG-------GCGAUAUUGUUUUCGUUUUUGUUUUUAAUUCCGGAGAAGAGGAACG---UGCAGCAUUUA--AUGCGCGUUACCAGUGGGAAU----AAACAUAUAUAUAUGUACUU ------(((((((((((-------((((........))))...(((((...(((((.(......((((((---((((.......--.)))))))).))..).)))))----)))))))))))))))).... ( -31.80, z-score = -2.37, R) >droPer1.super_3 5280098 109 - 7375914 ------GCGUGUGUGUG-------GCGAUAUUGUUUUCGUUUUUGUUUUUAAUUCCGGAGAAGAGGAACG---UGCAGCAUUUA--AUGCGCGUUACCAAUGGGAAU----AAACAUAUAUAUAUGUACUU ------(((((((((((-------((((........))))...(((((...(((((.(......((((((---((((.......--.)))))))).))..).)))))----)))))))))))))))).... ( -30.70, z-score = -2.11, R) >consensus GAGUGGGUGUGUGUGGGCUACGCCGCAAGUUUGUUUUCGUUU__GCUUUUAAUUGCCGAGAAAAAGGAUUAAUUGUGGCACUGAAAAUGCGUGUUACUUAAUGUAAUGUGCAAACAUGCGUAAAUAUUCAU ........((((((.......(((((((((((.(((((.....................))))).))))...)))))))........((((((((((.....)))))))))).))))))............ (-15.58 = -18.54 + 2.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:21 2011