| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,704,753 – 21,704,853 |
| Length | 100 |
| Max. P | 0.854754 |
| Location | 21,704,753 – 21,704,853 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.92 |
| Shannon entropy | 0.36551 |
| G+C content | 0.56441 |
| Mean single sequence MFE | -39.20 |
| Consensus MFE | -21.67 |
| Energy contribution | -24.26 |
| Covariance contribution | 2.58 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854754 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21704753 100 - 27905053 -----GGCCGAUAUCCCACAUCCAAGAUGCUGGGGGAGGCCUAUGCCAUAAGCGUCUAAAAUGCUAAACGGCCGGCGCUGUCGUCAUUGAAGUUGACAGUGACCA -----(((((...(((((((((...)))).)))))..(((....)))...(((((.....)))))...)))))((((((((((.(......).)))))))).)). ( -41.00, z-score = -3.24, R) >droAna3.scaffold_13340 12254981 96 + 23697760 -----UGCCAUGAUCCCAGAGAGCCGA-GCCGGUGGUGCGGU-UACCGGGACGGUACGGGAGGCCGAU--GCUGUCGCUUUCGUCAUUGAAGUUGUCAGUGGCGA -----.............((((((...-.(((((((.....)-))))))((((((((((....))).)--))))))))))))((((((((.....)))))))).. ( -39.70, z-score = -1.40, R) >droEre2.scaffold_4820 4125716 105 + 10470090 GGCCGAUACGAUAUCCCAGCUCCAAGACGCCGGGGGAGGCCUAUGCCAAAAGCGUCUAAAAUGCUAAACGGCCGGCGCUGUCGUCAUUGAAGUUGACAGUGACCA (((((........((((.((........)).))))..(((....)))...(((((.....)))))...)))))((((((((((.(......).)))))))).)). ( -39.40, z-score = -2.17, R) >droYak2.chr3R 4055624 100 + 28832112 -----GGCCGAUAUCCCAGUUGAAAGACGCCGGGGGAGGCCUAUGCCAAAAGCGUCCAAAAUGCUAAACGGCCGGCGCUGUCGUCAUUGAAGUUGACGGUGACCA -----(((((...((((.(((....))).....))))(((....)))...(((((.....)))))...)))))((((((((((.(......).)))))))).)). ( -39.70, z-score = -2.25, R) >droSec1.super_13 488235 100 - 2104621 -----GGCCGAUAUCCCAGGUCCAAGAUGCCGGGGGAGGCCUAUGCCAAAAGCGUCUAAAAUGCUAAACGGCCGGCGCUGUCGUCAUUGAAGUUGACAGUGAUCA -----(((((...((((.(((.......)))..))))(((....)))...(((((.....)))))...)))))((((((((((.(......).)))))))).)). ( -38.30, z-score = -2.13, R) >droSim1.chr3R 21549339 100 - 27517382 -----GGCCGAUAUCCCAGAUCCAAGAUGCCGGGGGAGGCCUAUGCCAAAAGCGUCUUAAAUGCUAAACGGCCGGCGCUGUCGUCAUUGAAGUUGACAGUGACCA -----(((((...((((....((........))))))(((....)))...(((((.....)))))...)))))((((((((((.(......).)))))))).)). ( -37.10, z-score = -1.99, R) >consensus _____GGCCGAUAUCCCAGAUCCAAGAUGCCGGGGGAGGCCUAUGCCAAAAGCGUCUAAAAUGCUAAACGGCCGGCGCUGUCGUCAUUGAAGUUGACAGUGACCA .....(((((...((((..............))))..(((....)))...(((((.....)))))...)))))((((((((((.(......).)))))))).)). (-21.67 = -24.26 + 2.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:17 2011