| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,691,869 – 21,691,977 |
| Length | 108 |
| Max. P | 0.936335 |
| Location | 21,691,869 – 21,691,977 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 78.51 |
| Shannon entropy | 0.41549 |
| G+C content | 0.33688 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -16.38 |
| Energy contribution | -17.25 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21691869 108 + 27905053 AGCUGAUGCAGGCGAGUCAUUGCGAGAGAA-UUCAAUUUGUGGAUUUAUGGGAUUGGAUUUACGAAUUGGUUUUAUUAUGAUGAAUGCGCAAUAAACGUAAUCGAAUAG .((....))..(((..(((((..((.((((-(.(((((((((((((((......)))))))))))))))))))).))..)))))...)))................... ( -27.90, z-score = -2.33, R) >droEre2.scaffold_4820 4112598 108 - 10470090 AGCUGAUGCAAGCGAGUCAUUGCGAGAAAA-UUCAAUUUGUGGAUUUAUGGGAUUGGAUUUACGAAUUGGUUUUAUUAUGAUGAAUGAGCAAUAAACGUAAUCGAAUAG .((....))..((...(((((..((.((((-(.(((((((((((((((......)))))))))))))))))))).))..)))))....))................... ( -25.20, z-score = -1.90, R) >droYak2.chr3R 4042398 108 - 28832112 AGCUGAUGCAGUCGAGUCAUUGCGAGAAAA-UUCAAUUUGUGAAUUUAUGGGAUUGGAUUUACGAAUUGAUUUUAUUAUGAUGAAUGAGCAAUAAACGUAAUCGAAUAG .(((.(((((((......)))))....(((-.((((((((((((((((......)))))))))))))))).)))..........)).)))................... ( -24.90, z-score = -1.66, R) >droSec1.super_13 470682 109 + 2104621 AGCCGAUGCAGGCGAGUCAUUGCGAGAAAAAUUUAAUUUGUGGAUUUAUGGGAUUGGAUUUACGAAUUGGUUUUAUUAUGAUGAAUGCGCAAUAAACGUAAUCGAAUAG ...((((((..(((..(((((..((..((((((.((((((((((((((......)))))))))))))))))))).))..)))))...))).......)).))))..... ( -24.70, z-score = -1.26, R) >droSim1.chr3R 21535426 108 + 27517382 AGCUGAUGCAGGCGAGUCAUUGCGAGAAAA-UUCAAUUUGUGGAUUUAUGGGAUUGGAUUUACGAAUUGGUUUUAUUAUGAUGAAUGCGCAAUAAACGUAAUCGAAUAG .((....))..(((..(((((..((.((((-(.(((((((((((((((......)))))))))))))))))))).))..)))))...)))................... ( -27.80, z-score = -2.42, R) >droGri2.scaffold_15116 875606 98 - 1808639 AGCUGCUGUGAAUAAAAUAUUGAAAAAUAAAUAAGAAUUGGGA---UAAUAAAUUUAACUCAUCAAUCAAUGCACAUCCGAAGAA-AUUUACUAUUCACAAG------- ......((((((((...((((....)))).....((..((((.---(((.....))).))))....)).................-......))))))))..------- ( -12.40, z-score = -0.73, R) >consensus AGCUGAUGCAGGCGAGUCAUUGCGAGAAAA_UUCAAUUUGUGGAUUUAUGGGAUUGGAUUUACGAAUUGGUUUUAUUAUGAUGAAUGCGCAAUAAACGUAAUCGAAUAG .((....))..(((..(((((..((.......((((((((((((((((......)))))))))))))))).....))..)))))...)))................... (-16.38 = -17.25 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:15 2011