| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,690,792 – 21,690,850 |
| Length | 58 |
| Max. P | 0.730935 |
| Location | 21,690,792 – 21,690,850 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 76.44 |
| Shannon entropy | 0.45930 |
| G+C content | 0.47767 |
| Mean single sequence MFE | -13.33 |
| Consensus MFE | -10.36 |
| Energy contribution | -10.19 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21690792 58 - 27905053 --GAAAUCAUGUUGGAGUCACGCCUUUAGCACGGUCAGGAU---UUCCUCACAUGCACUUAAC --.....(((((.((((((..(((........)))...)).---))))..)))))........ ( -11.50, z-score = -0.71, R) >droSim1.chr3R 21534341 58 - 27517382 --GAAACCAUGUUGGAGUCACGCCUUUACUAUGGUCAGGAU---UUCCUCACAUGCACUUAAC --.....(((((.((((((..(((........)))...)).---))))..)))))........ ( -12.30, z-score = -1.10, R) >droSec1.super_13 469596 58 - 2104621 --GAAACCAUGUUGGAGUCACGCCUUUACUAUGGUCAGGAU---UUCCUCACAUGCACUUAAC --.....(((((.((((((..(((........)))...)).---))))..)))))........ ( -12.30, z-score = -1.10, R) >droYak2.chr3R 4041273 58 + 28832112 --GAAACCAUGUUGGAGUCACGCCUUUAGUGUGGUCAGGAU---UUCCUCACGUGCACUUAAC --...((((..((((((......))))))..)))).(((..---..))).............. ( -12.50, z-score = -0.01, R) >droEre2.scaffold_4820 4111528 58 + 10470090 --GAAACCAUGUUGGAGUCACGCCUUUAGUGUGGUCAGGAU---AUCCUCACGUGCACUUAAC --...((((..((((((......))))))..)))).(((..---..))).............. ( -12.50, z-score = -0.03, R) >droAna3.scaffold_13340 12242392 58 + 23697760 GGGAGACCAUGUUGGUGUUACGCCUUUGGCAUGGUCAGGAU---CUGCGUUUUUACAUAGA-- ....(((((((((((((...))))...)))))))))....(---(((.((....)).))))-- ( -17.50, z-score = -1.63, R) >dp4.chr2 7397361 60 + 30794189 --UAAGUCCUGUUGGAGCAACGCCUCU-GCAUGGUCAGAGCCCGUUUCUAACACUACCGUACC --...((..(((((((..((((.((((-(......)))))..)))))))))))..))...... ( -14.70, z-score = -1.00, R) >consensus __GAAACCAUGUUGGAGUCACGCCUUUAGUAUGGUCAGGAU___UUCCUCACAUGCACUUAAC .....((((((((((((......)))))))))))).((((.....)))).............. (-10.36 = -10.19 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:14 2011