| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,678,305 – 21,678,366 |
| Length | 61 |
| Max. P | 0.524280 |
| Location | 21,678,305 – 21,678,366 |
|---|---|
| Length | 61 |
| Sequences | 4 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 91.80 |
| Shannon entropy | 0.12898 |
| G+C content | 0.53279 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -15.01 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21678305 61 - 27905053 UGACCAUCUAUGGUCCGUUUAUCGCGAGAUGCAGAGAAGCGCCGGAUGACCCGGCAUGUUG .(((((....))))).....(((....)))((......))(((((.....)))))...... ( -20.00, z-score = -1.71, R) >droSim1.chr3R 21507404 61 - 27517382 UGACCAUCUAUGGUCCGUUUAUCGCGAGAUGCAGAGAAGCGCCCGAUGACCCGGCAUUUUG .(((((....))))).....(((....)))((......))(((.(.....).)))...... ( -13.90, z-score = -0.30, R) >droSec1.super_13 457729 61 - 2104621 UGACCAUCUAUGGUCUGCUUAUCUCGAGAUGCAGAGAAGCGCCGGAUGACCCGGCAUUUUG .(((((....))))).(((..((((........)))))))(((((.....)))))...... ( -23.10, z-score = -3.16, R) >droEre2.scaffold_4820 4098783 61 + 10470090 UGACCAUUUAAGGUGUGCUUAUCGCGAGAUACAGAGAAGCGCCCGAUGACCCGGCAUUUUG ....((((...(((((.((((((....)))).))....))))).))))............. ( -13.50, z-score = -0.95, R) >consensus UGACCAUCUAUGGUCCGCUUAUCGCGAGAUGCAGAGAAGCGCCCGAUGACCCGGCAUUUUG .((((......)))).(((((((....))))......)))(((((.....)))))...... (-15.01 = -15.32 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:12 2011