| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,669,736 – 21,669,835 |
| Length | 99 |
| Max. P | 0.600670 |
| Location | 21,669,736 – 21,669,835 |
|---|---|
| Length | 99 |
| Sequences | 10 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 72.96 |
| Shannon entropy | 0.55489 |
| G+C content | 0.44618 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -12.18 |
| Energy contribution | -12.43 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21669736 99 - 27905053 --GAGGAAUUCCGGUCACGUGACUGUCAUUGGAUAU-CGAAAAC----UACGUACUUCCCAUUGGGAAUACCGUAG-GACUAACGAGCGUGACAAAUGCAAAUGAAG- --..((....)).(((((((....(((.((.(....-).))..(----((((...(((((...)))))...)))))-)))......)))))))..............- ( -26.80, z-score = -1.68, R) >droEre2.scaffold_4820 4090239 99 + 10470090 --GAGGAAUUCCGGUCACGUGACUGUCAUUGGAUAU-CGAAAAC----UACGUACUUCCCAUUGGGAAUUCCGUAA-GACUAACGAGCGUGACAAAUGCAAAUGAAG- --..((....)).(((((((....(((.((.(....-).))...----((((...(((((...)))))...)))).-)))......)))))))..............- ( -23.50, z-score = -0.72, R) >droYak2.chr3R 4019778 99 + 28832112 --GAGGAAUUCCGGUCACGUGACUGUCAUUGGAUAU-CGAAAAC----UACGUACUUCCCAUUGGGAAUUCCGUAA-GACUAACGAGCGUGACAAAUGCAAAUGAAG- --..((....)).(((((((....(((.((.(....-).))...----((((...(((((...)))))...)))).-)))......)))))))..............- ( -23.50, z-score = -0.72, R) >droSec1.super_13 449272 99 - 2104621 --GAGGAAUUCCGGUCACGUGACUGUCAUUGGAUAU-CGAAAAC----UACGUACUUCCCAUUGGGAAUUCCGUAG-GACUAACGAGCGUGACAAAUGCAAAUGAAG- --..((....)).(((((((....(((.((.(....-).))..(----((((...(((((...)))))...)))))-)))......)))))))..............- ( -26.80, z-score = -1.45, R) >droSim1.chr3R 21491813 99 - 27517382 --GAGGAAUUCCGGUCACGUGACUGUCAUUGGAUAU-CGAAAAC----UACGUACUUCCCAUUGGGAAUUCCGUAG-GACUAACGAGCGUGACAAAUGCAAAUGAAG- --..((....)).(((((((....(((.((.(....-).))..(----((((...(((((...)))))...)))))-)))......)))))))..............- ( -26.80, z-score = -1.45, R) >droPer1.super_3 1181566 102 + 7375914 --GGCAGAUUCAAGUCACGUGACUGCCUUUGGACAU-CGAACUC---GUACGGGAAUCCCAGCGGGAAUUUCGAAAGGUCUAACGAGCGUGACAAAUGCAAAUGAAAG --(((((..(((.......)))))))).((((((.(-(((((((---((..(((...))).)))))...)))))...))))))...((((.....))))......... ( -28.90, z-score = -1.19, R) >dp4.chr2 7371776 102 + 30794189 --GGCAGAUUCAAGUCACGUGACUGCCUUUGGACAU-CGAACUC---GUACGGGAAUCCCAGCGGGAAUUUCGAAAGGUCUAACGAGCGUGACAAAUGCAAAUGAAAG --(((((..(((.......)))))))).((((((.(-(((((((---((..(((...))).)))))...)))))...))))))...((((.....))))......... ( -28.90, z-score = -1.19, R) >droMoj3.scaffold_6540 25514888 107 - 34148556 GAAGAAGUUCGUAGUCACGUGAAUGCCAUAACAUAUCGAAUUACGCAUUACAGUUCGACUAAUGGGAAUUAGUCGAGUUCUAACGAGCGUGACAAAUGCAAAUGAAG- .............(((((((((.(((..................)))))))...(((((((((....)))))))))((((....)))))))))..............- ( -27.17, z-score = -1.88, R) >droGri2.scaffold_15074 2027379 105 + 7742996 GACGAAGUUUGAAGUCACGUGAAUGCUAUAACAUAUCAAAUUACGCAUUAC-GUUCGACUAAUGGGAAUUAA-GAAACUCUAACGAGCAUGACAAAUGCAAAUGAAG- ......(((((.((((((((((.(((..................)))))))-))..))))............-....(((....))).....)))))..........- ( -16.07, z-score = 0.07, R) >droAna3.scaffold_13340 12218521 86 + 23697760 --AAGGGAUUCAAGUCACGCGGCAGACUUUCUGUAUCCGAAAAU----UACUUAUCUCCCGAUGGGAAUUCCCAAA-GUCUAACGAGCGUGAC--------------- --...........((((((((..(((((((..............----.....(((....)))(((....))))))-))))..)..)))))))--------------- ( -22.40, z-score = -1.17, R) >consensus __GAGGAAUUCCAGUCACGUGACUGUCAUUGGAUAU_CGAAAAC____UACGUACUUCCCAUUGGGAAUUCCGUAA_GACUAACGAGCGUGACAAAUGCAAAUGAAG_ .............(((((((....................................((((...))))............(....).)))))))............... (-12.18 = -12.43 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:10 2011