| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,622,484 – 21,622,579 |
| Length | 95 |
| Max. P | 0.867586 |
| Location | 21,622,484 – 21,622,579 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 77.09 |
| Shannon entropy | 0.44499 |
| G+C content | 0.51140 |
| Mean single sequence MFE | -30.84 |
| Consensus MFE | -16.55 |
| Energy contribution | -16.48 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21622484 95 - 27905053 -----GAAUCUGACGAGUUGCC-GGGC-CAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGCUG----GGGGCAGAAGCCUCAUCA------- -----......((.(((..((.-..((-((...((((((((((.(((.(....).))).)))))))))))))).....((((..----...))))..))))).)).------- ( -30.10, z-score = -0.69, R) >droSim1.chr3R 21452256 95 - 27517382 -----GAAUCUGACGAGUUGCC-GGGC-CAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGCUG----GGGGCAGAAGCCUCAUCA------- -----......((.(((..((.-..((-((...((((((((((.(((.(....).))).)))))))))))))).....((((..----...))))..))))).)).------- ( -30.10, z-score = -0.69, R) >droSec1.super_13 411345 95 - 2104621 -----GAAUCUGACGAGUUGCC-GGGC-CAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGCUG----GGGGCAGAAGCCUCAUCA------- -----......((.(((..((.-..((-((...((((((((((.(((.(....).))).)))))))))))))).....((((..----...))))..))))).)).------- ( -30.10, z-score = -0.69, R) >droYak2.chr3R 3980530 99 + 28832112 -----GAAGCUGACGAGUUGCC-GGGC-CAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGGUGGCAUGAGGCAGAGGUCUCAUCA------- -----...........((..((-((((-((...((((((((((.(((.(....).))).)))))))))))))).....))))..))(((((((....)))))))..------- ( -37.00, z-score = -2.70, R) >droEre2.scaffold_4820 4047561 96 + 10470090 ----AGAAUCUGACGAGUUGCC-GGGC-CAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGGUG----GGGGCUGAAGUCUCAUCA------- ----.((.....((.(((((..-..((-((...((((((((((.(((.(....).))).))))))))))))))..))))).)).----(((((....))))).)).------- ( -30.70, z-score = -1.31, R) >droAna3.scaffold_13340 12179325 104 + 23697760 ----GCAUGCUGACGAGUUGCCAGGGC-AAAAAUAAAUCAGCUGGGGCGUAGGCACUUGGGUUGAUUUAUGGCAAUGACUGGAG----GAGGCGGCAGCUUCAUGGCAUCUCG ----.........((((.(((((..((-....(((((((((((.(((.(....).))).))))))))))).))...........----(((((....))))).))))).)))) ( -38.40, z-score = -2.38, R) >dp4.chr2 7323799 92 + 30794189 --------GCUGACGAGUUACC-AGGA-CAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCCAAGACUGGAG----GAGGCUCACGCUACGGCA------- --------......((((..((-....-....(((((((((((.(((.(....).))).)))))))))))..(((....))).)----)..))))..((....)).------- ( -30.50, z-score = -2.24, R) >droPer1.super_3 1133997 92 + 7375914 --------GCUGACGAGUUACC-AGGA-CAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCCAAGACUGGAG----GAGGCUCACGCUACGGCA------- --------......((((..((-....-....(((((((((((.(((.(....).))).)))))))))))..(((....))).)----)..))))..((....)).------- ( -30.50, z-score = -2.24, R) >droWil1.scaffold_181130 2236539 91 + 16660200 ----CAAUGCUGACGAGUUGCCAGGGCAAAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAA--AAUGGCA----GAGGCGGAAACAG------------ ----....(((......((((((..((.....(((((((((((.(((.(....).))).))))))))))).))..--..)))))----).)))(....)..------------ ( -31.00, z-score = -3.90, R) >droVir3.scaffold_12855 7058871 85 - 10161210 --------ACGAACGACUUGGCAGUGC-AAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGG--ACCAAGGGAA----AUGGCAUUGGCA------------- --------..........((.((((((-....(((((((((((.(((.(....).))).)))))))))))..--.((...))..----...)))))).))------------- ( -25.30, z-score = -2.39, R) >droMoj3.scaffold_6540 8585109 93 + 34148556 CCGCAGGAGCGAGCGACUUGGCAGGGC-AAAAAUAAAUCAACUGGGGCGUAGGCACUUGAGUUGAUUUAUGG--AGCAAGGGAA----AUGGCAACGGCA------------- .(((....))).((..((((((...))-....(((((((((((.(((.(....).))).)))))))))))..--..))))....----.((....)))).------------- ( -25.50, z-score = -1.26, R) >consensus _____GAAGCUGACGAGUUGCC_GGGC_CAAAAUAAAUCAGCUGGGGCGUAGGCACUUGAGUUGAUUUAUGGCAAUGACUGGAG____GAGGCAGAAGCCUCAUCA_______ ................................(((((((((((.(((.(....).))).)))))))))))....................(((....)))............. (-16.55 = -16.48 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:08 2011