| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,613,596 – 21,613,690 |
| Length | 94 |
| Max. P | 0.901915 |
| Location | 21,613,596 – 21,613,690 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 73.40 |
| Shannon entropy | 0.47700 |
| G+C content | 0.45629 |
| Mean single sequence MFE | -17.84 |
| Consensus MFE | -11.55 |
| Energy contribution | -12.96 |
| Covariance contribution | 1.41 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21613596 94 + 27905053 -AGCAGCUAAAUGUGUUGCGCUUUUGUCUAGGCCAACUGAAUGUAUUUUCGUUUCGGCCUUUUUCUCCUUAUAUUUUU--CCACGAGUACCAACUCG -.(((((.......)))))..........(((((((.((((......)))).)).)))))..................--...(((((....))))) ( -20.90, z-score = -2.27, R) >droAna3.scaffold_13340 12170479 75 - 23697760 AUGCAGCCAAAUGUGUUGCGCUUUUGUUUAAGCCAACUCC-CAACUCCCAGCUCCCAUCUCGCAUCUCCCAUCUCG--------------------- ((((.((.....))((((.((((......))))))))...-....................))))...........--------------------- ( -9.50, z-score = -1.26, R) >droEre2.scaffold_4820 4038515 96 - 10470090 -AGCAGCUAAAUGUGUUGCGCAUUUGUCUAGGCCAGCUGAAUGUGUUUUCGUUUCGGCCUUUUUCACCUUAUUUUUUUUUCGCCGAGUUCCAACUCG -.((((.((((((((...)))))))).))(((((((.((((......)))).)).))))).....................))(((((....))))) ( -21.10, z-score = -1.17, R) >droSec1.super_13 402471 93 + 2104621 -AGCAGCUAAAUGUGUUGCGCUUUUGUCUAGGCCAGCUGAAUGUGUUUUCGUUUCGGCCUUUUUCUCCUUAUAUUUU---CCACGAGUCCCAACUCG -.(((((.......)))))..........(((((((.((((......)))).)).))))).................---...(((((....))))) ( -20.30, z-score = -1.41, R) >droSim1.chr3R 21441117 94 + 27517382 -AGCAGCUAAAUGUGUUGCGCUUUUGUCUAGGCCAGCUGAAUGUGUUUUCGUUCCGGCCUUUUUCUCCUUAUAUUUUU--CCACCAGUCCCAACUCG -.(((((.......)))))..........(((((....(((((......))))).)))))..................--................. ( -17.40, z-score = -0.90, R) >consensus _AGCAGCUAAAUGUGUUGCGCUUUUGUCUAGGCCAGCUGAAUGUGUUUUCGUUUCGGCCUUUUUCUCCUUAUAUUUUU__CCACGAGUCCCAACUCG ..(((((.......)))))..........(((((....(((((......))))).))))).......................(((((....))))) (-11.55 = -12.96 + 1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:07 2011