| Sequence ID | dm3.chr2L |
|---|---|
| Location | 799,086 – 799,187 |
| Length | 101 |
| Max. P | 0.870524 |
| Location | 799,086 – 799,187 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 92.41 |
| Shannon entropy | 0.10661 |
| G+C content | 0.41914 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -24.31 |
| Energy contribution | -25.37 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 799086 101 + 23011544 GGGAUUCCCCAAAAGUUGUGCUAAUUGAUUGGAAAAUCACACACACAGGUGUUAAAAAGUAUGUAACGCUGUAUUCUGAAGCAAAGCCCUUGGGAAUACUG (((....)))......((((.....(((((....)))))....))))(((((((.........)))))))(((((((.(((.......))).))))))).. ( -25.50, z-score = -1.38, R) >droSec1.super_14 769011 101 + 2068291 GGGAUAUCCCAAAAGUUGUGCUAAUUGAUUGCAAAAUCACACACACAGGUGUCAAAAAGGAUGCAACGCUGUGUUCUGAAGCAAAGCACUUGGGAAUUCUG (((((.((((((..(((.((((...(((((....)))))((.(((((((((((......)))))....))))))..)).)))).)))..))))))))))). ( -30.20, z-score = -2.32, R) >droSim1.chr2L 800512 101 + 22036055 GGGAUAUCCCAAAAGUUGUGCUAAUUGAUUGCAAAAUCACACACACAGGUGUCAAAAAGGAUGCAACGCUGUAUUCUUGAGCAAAGCGCUUGGGAAUUCUG (((((.((((((..(((.((((...(((((....))))).((((....))))....(((((((((....))))))))).)))).)))..))))))))))). ( -31.60, z-score = -2.89, R) >consensus GGGAUAUCCCAAAAGUUGUGCUAAUUGAUUGCAAAAUCACACACACAGGUGUCAAAAAGGAUGCAACGCUGUAUUCUGAAGCAAAGCACUUGGGAAUUCUG (((((.((((((..(((.((((...(((((....))))).((((....)))).....((((((((....))))))))..)))).)))..))))))))))). (-24.31 = -25.37 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:55 2011