| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,587,328 – 21,587,391 |
| Length | 63 |
| Max. P | 0.559081 |
| Location | 21,587,328 – 21,587,391 |
|---|---|
| Length | 63 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 81.89 |
| Shannon entropy | 0.35593 |
| G+C content | 0.46739 |
| Mean single sequence MFE | -15.20 |
| Consensus MFE | -10.58 |
| Energy contribution | -10.56 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21587328 63 + 27905053 UUGGUAAACGGAAUCG--CAGCUCAUUAGCAUUGAAAGUGUCGCCGCUUUCAAUCAAAC--CAGGUG-- (((((...........--..(((....)))((((((((((....))))))))))...))--)))...-- ( -15.80, z-score = -1.50, R) >droSim1.chr3R 21415103 63 + 27517382 UUGGUAAACGGAAUCG--CAGCUCAUUAGCAUUGAAAGUGUCGCCGCUUUCAAUCAAAC--CAGGUG-- (((((...........--..(((....)))((((((((((....))))))))))...))--)))...-- ( -15.80, z-score = -1.50, R) >droSec1.super_13 375470 63 + 2104621 UUGGUAAACGGAAUCG--CAGCUCAUUAGCAUUGAAAGUGUCGCCGCUUUCAAUCAAAC--CAGGUG-- (((((...........--..(((....)))((((((((((....))))))))))...))--)))...-- ( -15.80, z-score = -1.50, R) >droYak2.chr3R 3942509 65 - 28832112 UUGGUAAACGAAAUCG--CAGCUCAUUAGCAUUGAAAGUGUCGCCGCUUUCAAUCAGAC--CAGGUGUG (((((...........--..(((....)))((((((((((....))))))))))...))--)))..... ( -15.90, z-score = -1.11, R) >droEre2.scaffold_4820 4009949 50 - 10470090 -------------UCG--CAGCUCAUUAGCAUUGAAAGUGUCGCCGCUUUCAAUCAGUC--CAGGUG-- -------------.((--(.(((....)))((((((((((....)))))))))).....--...)))-- ( -12.50, z-score = -1.89, R) >droAna3.scaffold_13340 12145247 62 - 23697760 -GUGGAAGCGAAAUCG--CAGCUCAUUAGCAUUGAAAGUAGUAGUGCUUUCAAUCAGAC--CAGGUG-- -.(((..(((....))--).(((....)))((((((((((....))))))))))....)--))....-- ( -16.90, z-score = -1.96, R) >dp4.chr2 7281762 67 - 30794189 AUCGGAAUCGGAAUCGGGCAGCUCAUUAGCAUUGAAUGUUGCGUGGCUUUCCAUCAAACUACAGGUG-- .........(((((((.((((((((.......)))..))))).)))..))))...............-- ( -13.70, z-score = 0.37, R) >consensus UUGGUAAACGGAAUCG__CAGCUCAUUAGCAUUGAAAGUGUCGCCGCUUUCAAUCAAAC__CAGGUG__ ............(((.....(((....)))((((((((((....)))))))))).........)))... (-10.58 = -10.56 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:03 2011