| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,579,518 – 21,579,613 |
| Length | 95 |
| Max. P | 0.812166 |
| Location | 21,579,518 – 21,579,613 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 66.15 |
| Shannon entropy | 0.64883 |
| G+C content | 0.44078 |
| Mean single sequence MFE | -25.49 |
| Consensus MFE | -12.76 |
| Energy contribution | -12.29 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812166 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 21579518 95 - 27905053 ----AUCUUUGUAUCUGUGCAUUGGCGAGCGCUU-UGUAUCUGCAACGCACUUAGCAUUUAGCUGACUGCAACA-UGCCGCUCUGUUGCAUCAGC-----AAUUUU---- ----..(..((((....))))..)(((((.((.(-(((....)))).)).))).)).....(((((.(((((((-........))))))))))))-----......---- ( -27.80, z-score = -0.80, R) >droSim1.chr3R 21406718 95 - 27517382 ----AUCUUUGUAUCUGUGUAUCUGCGAGCUCAU-UGUAUCUGCAACGCACUUAGCAUUUAGCUGACUGCAACA-UGCCGCUCUGUUGCAUCAGC-----AAUUUU---- ----.....(((....((((...(((((((....-.)).)).)))..))))...)))....(((((.(((((((-........))))))))))))-----......---- ( -24.20, z-score = -0.57, R) >droSec1.super_13 367207 95 - 2104621 ----AUCUUUGUAUCUGUGUAUCUGCGAGCUCAU-UGUAUCUGCAACGCACUUAGCAUUUAGCUGACUGCAACA-UGCCGCUCUGUUGCAUCAGC-----AAUUUU---- ----.....(((....((((...(((((((....-.)).)).)))..))))...)))....(((((.(((((((-........))))))))))))-----......---- ( -24.20, z-score = -0.57, R) >droYak2.chr3R 3933957 95 + 28832112 ----AUCUUUGUAUCUGUGCAUCUGCGAGCGCUU-UGUAUCUGCAACGCACUUAGCAUUUAGCUGACUGCAACA-UGCCGCUCUGUUGCAUCAGC-----AAUUUU---- ----.....((((....))))..((((((.((.(-(((....)))).)).))).)))....(((((.(((((((-........))))))))))))-----......---- ( -27.40, z-score = -1.00, R) >droEre2.scaffold_4820 4001566 96 + 10470090 ----AUCUUUGUAUCUGUGUAUCUGCAAGCGCUU-UGUAUCUGCAACGCACUUAGCAUUUAGCUGACUGCAACAGAGCGGCUCUGUUGCAUCAGC-----AAUUUU---- ----...............((..((((((.((.(-(((....)))).)).))).)))..))(((((.((((((((((...)))))))))))))))-----......---- ( -33.20, z-score = -2.54, R) >dp4.chr2 7272328 96 + 30794189 --CCCUCUGUGUGUCCGUCUCUCUCUCGCU-UCUCUAAA-UUGCAGCGCAGUUGGCGUUUAGCUGACUGUGGCA-UGCAACGUUGUUGCAUCAGC-----AAUCUU---- --.....((((((((............(((-.(......-..).)))(((((..((.....))..)))))))))-))))..(((((((...))))-----)))...---- ( -27.90, z-score = -1.81, R) >droPer1.super_3 1082162 96 + 7375914 --CCCUCUGUGUGUCCGUCUCUCUCUCGCU-UCUCUAAA-UUGCAGCGCAGUUGGCGUUUAGCUGACUGUGGCA-UGCAACGUUGUUGCAUCAGC-----AAUCUU---- --.....((((((((............(((-.(......-..).)))(((((..((.....))..)))))))))-))))..(((((((...))))-----)))...---- ( -27.90, z-score = -1.81, R) >droWil1.scaffold_181130 2193172 96 + 16660200 GUCUUGAAGUCUUGUUGUCUCUUAUUCACUGUACAUAAAUUUGAAACGCAUUUAA----UAGAUGACUGUGGCA-UGCAACGUUGUUGCAUCAGC-----AAUUUU---- ...........((((((........((((.((.(((....(((((.....)))))----...))))).)))).(-((((((...)))))))))))-----))....---- ( -16.60, z-score = 0.88, R) >droVir3.scaffold_12855 7008494 87 - 10161210 ------------CGCUAAACAUUGGCGCUUA-AC-UGUAAUUGCAACGCAA------UUUUGCUGACUGCGGCA-UGCAACGUUGUUGCAUCAGC--UGAAAAUUUUUUA ------------(((((.....)))))....-..-...((((((...))))------))..(((((.(((((((-........))))))))))))--............. ( -22.50, z-score = -0.43, R) >droMoj3.scaffold_6540 8538642 87 + 34148556 ------------CGCUAAGCAUUGGCGCUUA-AC-UGUAAUUGCAACGCAA-----UUUUUGCUGACUGCCGCA-UGCAACGUUGUUGCAUCAGCAAUGAAAAUUUA--- ------------......(((((((((.(((-.(-...((((((...))))-----))...).))).))))).)-)))..((((((((...))))))))........--- ( -23.30, z-score = -0.14, R) >droGri2.scaffold_15074 1942345 84 + 7742996 ------------CGCUCAACAUUGGCGCUUA-GC-AGUAAUUGCAACGCAA------UUUUGCUGACUGCGGCA-UGCAACUUUGUUGCAUCAGC--UUAAAAUUUA--- ------------.(((......((.((((((-((-((.((((((...))))------)))))))))..))).))-((((((...))))))..)))--..........--- ( -25.40, z-score = -1.38, R) >consensus ____AUCUUUGUAUCUGUGUAUCUGCGAGUGCAU_UGUAUUUGCAACGCACUUAGCAUUUAGCUGACUGCAGCA_UGCAACUUUGUUGCAUCAGC_____AAUUUU____ .............................................................(((((.(((((((.........))))))))))))............... (-12.76 = -12.29 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:02 2011