| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,575,730 – 21,575,783 |
| Length | 53 |
| Max. P | 0.953177 |
| Location | 21,575,730 – 21,575,783 |
|---|---|
| Length | 53 |
| Sequences | 9 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 82.55 |
| Shannon entropy | 0.35349 |
| G+C content | 0.42532 |
| Mean single sequence MFE | -11.90 |
| Consensus MFE | -9.65 |
| Energy contribution | -9.48 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.953177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21575730 53 - 27905053 UUUUCCCUGCUCAGCACGUGCUCAAGUGCGUGUAAAUAAAUAUGUGUGUGGCA ......(..(.(((((((..(....)..)))))...........)).)..).. ( -11.70, z-score = -0.39, R) >droAna3.scaffold_13340 12134376 50 + 23697760 UUCUCCCUGCUCAGCACGUGCUCAAGUGCGUGUAAAUAACUAUGUAUGUG--- .............(((((..(....)..))))).................--- ( -10.70, z-score = -1.58, R) >droEre2.scaffold_4820 3997822 50 + 10470090 UUUUCCCUGCUCAGCACGUGCUCAAGUGCGUGUAAAUACACAUGUGUGUG--- .............(((((..(....)..)))))...(((((....)))))--- ( -14.20, z-score = -1.67, R) >droYak2.chr3R 3930102 50 + 28832112 UUUUCCCUCCUCAGCACGUGCUCAAGUGCGUGUAAAUACAUAUGUGUGUG--- .............(((((..(....)..)))))..(((((....))))).--- ( -12.90, z-score = -2.86, R) >droSec1.super_13 363468 50 - 2104621 UUUUCCCUGCUCAGCACGUGCUCAAGUGCGAGUAAAUAAAUAUGUGUGUG--- .......(((((.((((........)))))))))................--- ( -11.30, z-score = -1.64, R) >droSim1.chr3R 21402968 50 - 27517382 UUUUCCCUGCUCAGCACGUGCUCAAGUGCGUGUAAAUAAAUAUGUGUGUG--- .............(((((..(....)..))))).................--- ( -10.70, z-score = -1.47, R) >droPer1.super_3 1077816 50 + 7375914 UUUUCUUUUCUCAGCACGUGCUCAAGUGCGUGUAAAUAAAUGUGUAUAUA--- .............(((((..(....)..))))).................--- ( -10.70, z-score = -2.33, R) >dp4.chr2 7268025 50 + 30794189 UUUUCUUUUCUCAGCACGUGCUCAAGUGCGUGUAAAUAAAUGUGUAUAUA--- .............(((((..(....)..))))).................--- ( -10.70, z-score = -2.33, R) >droWil1.scaffold_181150 3541694 53 - 4952429 UCCUCCACCCUACACACAUACACAUGUGUAUGUAUAUACAUACGUAUGUGGCA ....................(((((((((((((....)))))))))))))... ( -14.20, z-score = -1.66, R) >consensus UUUUCCCUGCUCAGCACGUGCUCAAGUGCGUGUAAAUAAAUAUGUGUGUG___ .............((((((((....)))))))).................... ( -9.65 = -9.48 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:44:01 2011