| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,567,962 – 21,568,057 |
| Length | 95 |
| Max. P | 0.701716 |
| Location | 21,567,962 – 21,568,057 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 75.66 |
| Shannon entropy | 0.55267 |
| G+C content | 0.49194 |
| Mean single sequence MFE | -20.65 |
| Consensus MFE | -13.00 |
| Energy contribution | -12.53 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21567962 95 - 27905053 ----UUUAUGUGGUGCCCUGACAGCUCCUGCUCAUUGGCUACCGCUACUGCAGCAAGCGACGCAUCAACUCGAUGAACUUCGAGAACCCCAUCUACCGC ----.....((((((...(((..(((((((((((.((((....)))).)).))).)).)).)).))).(((((......))))).........)))))) ( -25.30, z-score = -1.66, R) >droSim1.chr3R 21394754 94 - 27517382 ----UUUAUGUGGU-UCGUGACAGCUCCUGCUCAUUGGCUAUCGCUACUGCAGCAAGCGACGCAUCAACUCGAUGAACUUCGAGAAUCCCAUCUACCGC ----.....(((((-..(((...(((((((((((.((((....)))).)).))).)).)).)).....(((((......))))).....)))..))))) ( -27.10, z-score = -1.70, R) >droSec1.super_13 355796 94 - 2104621 ----UUUAUGUGGU-UCGUGACAGCUCCUGCUCAUUGGCUACCGCUACUGCAGCAAGCGGCGCAUCAACUCGAUGAACUUCGAGAAUCCCAUCUACCGC ----.....(((((-..(((...((.((((((((.((((....)))).)).))))...)).)).....(((((......))))).....)))..))))) ( -28.20, z-score = -1.61, R) >droYak2.chr3R 3922197 96 + 28832112 ---UUUAUCCUGUGACUCUGACAGCUCCUGCUCAUUGGCUACCGCUACUGCAGCAAGCGACGCAUCAACUCGAUGAACUUCGAGAAUCCCAUCUACCGC ---........(((....(((..(((((((((((.((((....)))).)).))).)).)).)).))).(((((......)))))............))) ( -20.10, z-score = -0.61, R) >droEre2.scaffold_4820 3989921 94 + 10470090 -----UUUAUCCGCUCUUCGGCAGCUCCUGCUCAUUGGCUACCGCUACUGCAGCAAGCGACGCAUCAACUCGAUGAACUUCGAGAACCCCAUCUACCGC -----.............(((..(((((((((((.((((....)))).)).))).)).)).)).....(((((......)))))...........))). ( -21.80, z-score = -0.80, R) >droAna3.scaffold_13340 12127011 99 + 23697760 UUGUUUCCGCAAAACAAAAAACAGCUCCUGCUCAUUGGCUACCGCUACUGCAGCAAGCGACGCAUCAACUCGAUAAACUUCGAGAAUCCCAUUUACCGC ((((((.....))))))......(((((((((((.((((....)))).)).))).)).)).)).....(((((......)))))............... ( -21.20, z-score = -1.96, R) >dp4.chr2 7261316 93 + 30794189 ------UUUUUGGUGCAUUGACAGCUCCUGCUCAUUGGCUAUCGCUACUGCAGCAAGCGACGCAUCAACUCGAUGAACUUUGAGAAUCCCAUUUACCGA ------...(((((((.......(((..((((((.((((....)))).)).)))))))...)))))))(((((......)))))............... ( -23.30, z-score = -1.17, R) >droPer1.super_3 1071058 93 + 7375914 ------UUUUUGGUGCAUUGACAGCUCCUGCUCAUUGGCUAUCGCUACUGCAGCAAGCGACGCAUCAACUCGAUGAACUUUGAGAAUCCCAUUUACCGA ------...(((((((.......(((..((((((.((((....)))).)).)))))))...)))))))(((((......)))))............... ( -23.30, z-score = -1.17, R) >droWil1.scaffold_181130 2180860 84 + 16660200 ---------------AAUUUUUAGCUCUUGCUUAUUGGCUAUCGCUACUGUAGCAAACGACGCAUCAAUUCAAUGAAUUUUGAGAAUCCCAUUUAUCGU ---------------........(((((((((((.((((....)))).)).)))))..)).)).....(((((......)))))............... ( -12.60, z-score = 0.04, R) >droMoj3.scaffold_6540 8525166 79 + 34148556 --------------------AUAGGUCCUCCUACUUGGCUACCGCUACUGCAGCAAGCGACGCAUCAACUCUAUGAACUUUGAGAAUCCCAUCUAUCGC --------------------...(((...((.....))..)))(((.....)))..((((....(((......)))......(((......))).)))) ( -10.40, z-score = 1.32, R) >droGri2.scaffold_15074 1930309 77 + 7742996 ----------------------AGCUGCUGCUCAUUGGCUAUCGCUACUGUAGCAAGCGACGCAUCAAUUCCAUGAACUUUGAGAAUCCGAUUUAUCGC ----------------------...((((((....((((....))))..)))))).((((.(.(((.((((((.......)).))))..))).).)))) ( -18.00, z-score = -0.30, R) >anoGam1.chr2R 17225878 86 - 62725911 -------------UGUCUCUGCAGAUUGUGUUCGUUCUCUACCGGCACUACACGCAUCGAAACUCGACCACGAUGAACUUUGACAAUCCGGUGUACCGA -------------((((.......((((((.(((..........((.......)).........))).)))))).......))))...(((....))). ( -16.45, z-score = 0.96, R) >consensus ______U_U_UGGU_CAUUGACAGCUCCUGCUCAUUGGCUACCGCUACUGCAGCAAGCGACGCAUCAACUCGAUGAACUUCGAGAAUCCCAUCUACCGC .......................(((.((((....((((....))))..))))..)))..........(((((......)))))............... (-13.00 = -12.53 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:58 2011