| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,567,611 – 21,567,722 |
| Length | 111 |
| Max. P | 0.770600 |
| Location | 21,567,611 – 21,567,722 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 91.48 |
| Shannon entropy | 0.16442 |
| G+C content | 0.42723 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -19.87 |
| Energy contribution | -19.76 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21567611 111 + 27905053 UCUCGAGUU-AGCAUUGGUCAUCUAAUUUUCCCAGCGACCAAGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCAA-UCUAAUACGAGGAUAUGCCUAU (((((.(((-.((.((((((................))))))..)))))........................((((((...))))))..-.......))))).......... ( -22.79, z-score = -2.20, R) >droAna3.scaffold_13340 12126747 110 - 23697760 UUCCGUGCC-AGCUUUGGUC--UAAACUUUUCCAGCGACCAAGCGAAAGAAUCAACCAAUUCACAUCUCAUGCGAUUCCAAAGGAAUCAAAUCUAAUACGAGGAUAUGCCUAU ...(((((.-.((((.((((--..............))))))))....((((......)))).........))((((((...)))))).........)))(((.....))).. ( -21.34, z-score = -0.95, R) >droEre2.scaffold_4820 3989570 112 - 10470090 UCUCGAGUUUAGCAUUGGUCAUCCAAUUUUGCCAGCGACCAGGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCAA-UCUAAUACGAGGAUAUGCCUAU (((((......(((((((....)))))...(((........)))))...........................((((((...))))))..-.......))))).......... ( -22.30, z-score = -1.03, R) >droYak2.chr3R 3921844 112 - 28832112 UCUCGAGUUUGGCAUUGGUCAUCCAAUUUUCCCAGCGACCAAGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCGGAGGAAUCAA-UCUAAUACGAGGAUAUGCCUAU (((((.(((((((.((((..(.......)..)))).).)))))).............................((((((...))))))..-.......))))).......... ( -22.20, z-score = -0.51, R) >droSec1.super_13 355445 111 + 2104621 UCUCGAGUU-AGCAUUGGUCAUCUAAUUUUCCCAGCGACCAAGCGCAACAAUAAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCAA-UCUAAUACGAGGAUAUGCCUAU (((((.(((-.((.((((((................))))))..)))))........................((((((...))))))..-.......))))).......... ( -22.79, z-score = -2.26, R) >droSim1.chr3R 21394368 111 + 27517382 UCUCGAGUU-AGCAUUGGUCAUCUAAUUUUCCCAGCGACCAAGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCAA-UCUAAUACGAGGAUAUGCCUAU (((((.(((-.((.((((((................))))))..)))))........................((((((...))))))..-.......))))).......... ( -22.79, z-score = -2.20, R) >consensus UCUCGAGUU_AGCAUUGGUCAUCUAAUUUUCCCAGCGACCAAGCGCAACAAUCAUCCAAUCCACAUUUCACACGAUUCCAGAGGAAUCAA_UCUAAUACGAGGAUAUGCCUAU (((((......((.((((((................)))))))).............................((((((...))))))..........))))).......... (-19.87 = -19.76 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:57 2011