| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,657,884 – 8,657,937 |
| Length | 53 |
| Max. P | 0.831990 |
| Location | 8,657,884 – 8,657,937 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 93.96 |
| Shannon entropy | 0.10622 |
| G+C content | 0.35472 |
| Mean single sequence MFE | -6.80 |
| Consensus MFE | -6.88 |
| Energy contribution | -6.84 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.03 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8657884 53 + 23011544 CGUCAACUUUUUGACUUCGUCUUGAUUUAAAUCCGACUUUCUUAAACUGAGAU .(((((....)))))...(((((..(((((...........)))))..))))) ( -7.60, z-score = -1.00, R) >droSim1.chr2L 8440630 53 + 22036055 CGUCAACUUUUUGACUUGGUCUUGAUUUAAAUCCGACUUCCUUAAACUGAGAU .(((((....)))))...(((((..(((((...........)))))..))))) ( -7.70, z-score = -0.85, R) >droSec1.super_3 4137351 53 + 7220098 CGUCAACUUUUUGACUUGGUCUUGAUUUAAAUCCGACUUCCUUAAACUGAGAU .(((((....)))))...(((((..(((((...........)))))..))))) ( -7.70, z-score = -0.85, R) >droYak2.chr2L 11301763 53 + 22324452 CGUCAACUUUUUGACUUAAUCCUGAUUUAAAUCCCACUGCCUUAAACUGAGAU .(((((....)))))...................................... ( -3.70, z-score = -0.69, R) >droEre2.scaffold_4929 9249625 53 + 26641161 CGUCAACUUUUUGACUUCAUCUUGAUUUAAAUCCGACUGCCUUAAACUGAGAU .(((((....)))))...(((((..(((((...........)))))..))))) ( -7.30, z-score = -1.78, R) >consensus CGUCAACUUUUUGACUUCGUCUUGAUUUAAAUCCGACUUCCUUAAACUGAGAU .(((((....)))))...(((((..(((((...........)))))..))))) ( -6.88 = -6.84 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:33 2011