| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,537,677 – 21,537,770 |
| Length | 93 |
| Max. P | 0.971603 |
| Location | 21,537,677 – 21,537,770 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 84.42 |
| Shannon entropy | 0.24903 |
| G+C content | 0.32523 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -14.44 |
| Energy contribution | -14.44 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.971603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21537677 93 + 27905053 CUUCCAUAUAACUAACUAUAUGUAUGUAUAUAUACAUAUAACUUUCCAUUUUAUCCAUUCGAAGGUAACUACUUGGCUGAAUGGACGUUUCAU ................((((((((((....)))))))))).............((((((((.((((....))))...))))))))........ ( -18.30, z-score = -2.31, R) >droSim1.chr3R 21373432 91 + 27517382 CUUCCAUAUAACUA--UAUGUAUGUGUAUAUAUACAUAAAACUUUCCAUUUUAUCCAUUCGAAGGUAACUACUUGGCUGAAUGGACGUUUCAU ..............--(((((((((....)))))))))...............((((((((.((((....))))...))))))))........ ( -17.40, z-score = -1.73, R) >droSec1.super_13 334832 91 + 2104621 CUUCCAUACAACUA--UAUGUAUGUAUGUACAUACAUAAAACUUUCCAUUUUAUCCAUUCGAAGGUAACUACUUGGCUGAAUGGACGUUUCAU ..............--(((((((((....)))))))))...............((((((((.((((....))))...))))))))........ ( -19.60, z-score = -2.62, R) >droEre2.scaffold_4820 3969070 80 - 10470090 CUUCCACAUAACUA----UAUGUACGUAAGUAUAUAUGGAACUUUCCA---------UUCGAAGGUAACUACUUGGCUGAAUGGACGUUUCAU .............(----(((((((....))))))))(((((..((((---------((((.((((....))))...)))))))).))))).. ( -23.40, z-score = -3.91, R) >consensus CUUCCAUAUAACUA__UAUAUAUAUGUAUAUAUACAUAAAACUUUCCAUUUUAUCCAUUCGAAGGUAACUACUUGGCUGAAUGGACGUUUCAU ..(((((.((.(((..(((((((((....)))))))))..((((((..............)))))).......))).)).)))))........ (-14.44 = -14.44 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:53 2011