| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,536,347 – 21,536,455 |
| Length | 108 |
| Max. P | 0.616672 |
| Location | 21,536,347 – 21,536,455 |
|---|---|
| Length | 108 |
| Sequences | 9 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.61 |
| Shannon entropy | 0.18080 |
| G+C content | 0.39368 |
| Mean single sequence MFE | -28.52 |
| Consensus MFE | -26.34 |
| Energy contribution | -26.38 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21536347 108 - 27905053 ------------GUGUGAGUGUGUGCGAUAAUUGCUUUAAUGCAUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCAACU ------------......(((((((((.(((.....))).)))))))))...((.((((((((.((....((((((..(((.......))).....)))).)).)).))))))))))... ( -28.30, z-score = -1.63, R) >droSim1.chr3R 21372137 108 - 27517382 ------------GUGUGAGUGUGUGCGAUAAUUGCUUUAAUGCAUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCAACU ------------......(((((((((.(((.....))).)))))))))...((.((((((((.((....((((((..(((.......))).....)))).)).)).))))))))))... ( -28.30, z-score = -1.63, R) >droSec1.super_13 333521 108 - 2104621 ------------GUGUGAGUGUGUGCGAUAAUUGCUUUAAUGCAUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCAACU ------------......(((((((((.(((.....))).)))))))))...((.((((((((.((....((((((..(((.......))).....)))).)).)).))))))))))... ( -28.30, z-score = -1.63, R) >droYak2.chr3R 3899075 108 + 28832112 ------------GUGUGAGUGUGUGCGAUAAUUGCUUUAAUGCAUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCAACU ------------......(((((((((.(((.....))).)))))))))...((.((((((((.((....((((((..(((.......))).....)))).)).)).))))))))))... ( -28.30, z-score = -1.63, R) >droEre2.scaffold_4820 3967832 108 + 10470090 ------------GUGUGAGUGUGUGCGAUAAUUGCUUUAAUGCAUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCAACU ------------......(((((((((.(((.....))).)))))))))...((.((((((((.((....((((((..(((.......))).....)))).)).)).))))))))))... ( -28.30, z-score = -1.63, R) >droAna3.scaffold_13340 12104349 120 + 23697760 GACUGUGUGGAGGCUGGGGUGUGUGCGAUAAUUGCUUUAAUGCAUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCAACU .(((.(((((((......(((((((((.(((.....))).)))))))))(((....))).....))))))).)))((((((......(((((............)))))....)))))). ( -31.50, z-score = -0.80, R) >dp4.chr2 7235355 119 + 30794189 GUGGGUGUGGA-GGGGUGGUGUCUGCGAUAAUUGCUUUAAUGCAUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCAACU ((.(((((...-.(((..(((..((.((((((((((..(((((((((....)))))))))...((((....))))...))).)))..)))).))..)))..))).......))))).)). ( -29.20, z-score = 0.03, R) >droPer1.super_3 1045069 120 + 7375914 GUGGGUGUGGAGGGGGUGGUGUCUGCGAUAAUUGCUUUAAUGCAUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCAACU ((.(((((.....(((..(((..((.((((((((((..(((((((((....)))))))))...((((....))))...))).)))..)))).))..)))..))).......))))).)). ( -29.60, z-score = 0.06, R) >droMoj3.scaffold_6540 8496119 107 + 34148556 -------------UUUAGCUGUGUGUGAUAAUUGCUUUAAUGCGUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCGCUC -------------.......(((((((.....(((......))))))))))(((.((((((((.((....((((((..(((.......))).....)))).)).)).))))))))))).. ( -24.90, z-score = -0.91, R) >consensus ____________GUGUGAGUGUGUGCGAUAAUUGCUUUAAUGCAUACGCAUGUGUGCGUUUUAACUUUAUGGAGUGUUGGCUGAUAAUGUCUUAAUUACUGCCUAGAUAAAAUGCCAACU ..................(((((((((.(((.....))).)))))))))...((.((((((((.((....((((((..(((.......))).....)))).)).)).))))))))))... (-26.34 = -26.38 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:52 2011