| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,517,297 – 21,517,349 |
| Length | 52 |
| Max. P | 0.557296 |
| Location | 21,517,297 – 21,517,349 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 64.94 |
| Shannon entropy | 0.59691 |
| G+C content | 0.68571 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -10.74 |
| Energy contribution | -11.77 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21517297 52 + 27905053 -----------CUGGCUUGGUCGGAUGGUCGGCUGGUC--GGCCGGUAGGCCCAAGUGGCCACCA -----------(((((...)))))..((((((....))--))))(((.((((.....))))))). ( -22.70, z-score = -0.58, R) >droSim1.chr3R 21349915 52 + 27517382 -----------CUGGCUUGGUCGGCUGGUUGGCUGGUC--GGCCGGUAGGCCCAAGUGGCCACCA -----------..((((.(..(((((....)))))..)--))))(((.((((.....))))))). ( -27.30, z-score = -1.80, R) >droSec1.super_13 306578 52 + 2104621 -----------CUGGCUUGGUCGGCUGGUCGGCUGGUC--GGCCGGUAGGCCCAAGUGGCCACCA -----------..((((.(..(((((....)))))..)--))))(((.((((.....))))))). ( -27.80, z-score = -1.95, R) >droYak2.chr3R 3879575 52 - 28832112 -----------CCGGCUGGGUCGACUGGUCGACUGGUC--GCUCGGUAGGCCCAAGUGGCCACCA -----------...((((((.((((..(....)..)))--))))))).((((.....)))).... ( -24.40, z-score = -1.36, R) >droEre2.scaffold_4820 3948670 52 - 10470090 -----------CUGGCUCGGUCGACUGGUCGGCUGGUU--GGCCAGUAGGCCCAAGUGGCCACCA -----------(((((((((((((....)))))))...--))))))..((((.....)))).... ( -25.20, z-score = -1.67, R) >dp4.chr2 7213830 65 - 30794189 UGCGGUAGUGCCUCGUCUCGGCAUUUGCCCUGCCUACACAGACUCGACCCCCCCAGUGGCCACCG ..((((.(.(((.(.....(((....)))(((......)))..............).)))))))) ( -15.50, z-score = 0.28, R) >droPer1.super_3 1023379 65 - 7375914 UGCGGUAGUGCCUCGUCUCGGCAUUUGCCCUGCCUACACAGACCCGACCCCCCCAGUGGCCACCG ..((((.(.(((.(.....(((....)))(((......)))..............).)))))))) ( -15.50, z-score = 0.18, R) >consensus ___________CUGGCUUGGUCGGCUGGUCGGCUGGUC__GGCCGGUAGGCCCAAGUGGCCACCA ...........((((((.....((((((....))))))..))))))..((((.....)))).... (-10.74 = -11.77 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:50 2011