| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,508,431 – 21,508,522 |
| Length | 91 |
| Max. P | 0.800662 |
| Location | 21,508,431 – 21,508,522 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 86.21 |
| Shannon entropy | 0.24806 |
| G+C content | 0.34633 |
| Mean single sequence MFE | -18.24 |
| Consensus MFE | -13.69 |
| Energy contribution | -14.05 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21508431 91 - 27905053 UAGGUGACAAUCGAGCAUGUGUCACCCAAGAAGAAGUACUUAAAACUAAAAGAUAU--AAGGCAACCAAAAAGUUAGUGAUUAAGUGAAGUCU ..(((((((..........))))))).....(((..(((((((.(((((.......--..(....).......)))))..)))))))...))) ( -19.99, z-score = -3.20, R) >droEre2.scaffold_4820 3936618 93 + 10470090 UAGGUAACUAACGAGCAUGUGUCACCCAUGAAGAAGUACUUAAAACAAAAACAACUAAAAGGAAACCAAUUAGUUAGUGGUUAAGUGAAGUCU ..(((.((............)).))).....(((..(((((((.......((((((((..(....)...)))))).))..)))))))...))) ( -14.10, z-score = -0.05, R) >droYak2.chr3R 3867657 91 + 28832112 UAGGUAACCAACGAGCAUGUGUUACCCAUAAUGAAGUACUUAAAACUAAAAGA--UAUAAGGAAACUAAAAAGUUAGUGGUUAAGUGGAGUCU ..((((((((.......)).))))))......((..(((((((.(((((....--....((....))......)))))..)))))))...)). ( -18.64, z-score = -1.92, R) >droSec1.super_13 295153 91 - 2104621 UAGGUGACAAUCGAGCAUGUGUCACCCAAGAAGAAGUACUUAAAACUAAAAGAUUA--AACUAUACCAAAAAGUUAGUGAUUAAGUGGAGUCU ..(((((((..........))))))).....(((..(((((((.(((((.......--...............)))))..)))))))...))) ( -16.15, z-score = -1.34, R) >droSim1.chr3R 21337826 93 - 27517382 UAGGUGACAAUCGAGCAUGUGUCACCCAAGAAGAAGUACUUAAAACUAAAAGGAAACUAAGGAAACCAAAAAGUUAGUGAUUAAGUGGAGUCU ..(((((((..........))))))).....(((..(((((((.(((((.((....))..(....).......)))))..)))))))...))) ( -22.30, z-score = -3.03, R) >consensus UAGGUGACAAUCGAGCAUGUGUCACCCAAGAAGAAGUACUUAAAACUAAAAGAAAU__AAGGAAACCAAAAAGUUAGUGAUUAAGUGGAGUCU ..((((((............))))))......((..(((((((.(((((...........(....).......)))))..)))))))...)). (-13.69 = -14.05 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:44 2011