| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,435,985 – 21,436,042 |
| Length | 57 |
| Max. P | 0.666393 |
| Location | 21,435,985 – 21,436,042 |
|---|---|
| Length | 57 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 55.13 |
| Shannon entropy | 0.72111 |
| G+C content | 0.48293 |
| Mean single sequence MFE | -14.12 |
| Consensus MFE | -5.61 |
| Energy contribution | -5.05 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.93 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21435985 57 - 27905053 AGCUUUGAAUGCCAUCCGAUGGGGAAUUUUAUUACGAGUCCGACGAGGUAUGGCAUU .......((((((((((..((.(((.(((......))))))..)).)).)))))))) ( -14.50, z-score = -1.00, R) >droPer1.super_8 8768 56 - 3966273 -UUUUCCGAUGGCAAUCGAUUCGCAGGACUCUCCCAAUCACGAAGAGACAUGCCGCG -.....((.(((((.((..((((..((......)).....))))..))..))))))) ( -12.00, z-score = -0.33, R) >dp4.chr4_group3 5526678 56 - 11692001 -UUUUCCGAUGGCAGUCGAUUGGCAGGACUCUCCCGAUCACGGAGAGACAUGCCACG -.....((((....))))..(((((...((((((.......))))))...))))).. ( -19.60, z-score = -2.23, R) >droAna3.scaffold_13340 15426941 57 - 23697760 AGGUUUUGAUGCAGAUUGAUGGAGAAUCCAUGUACAAAUCGUAUAAGGUAUUCCACU ...................(((((...((.(((((.....))))).))..))))).. ( -10.40, z-score = -0.31, R) >consensus _GUUUCCGAUGCCAAUCGAUGGGCAAGACUCUCACAAUCACGAAGAGACAUGCCACG .........((((((((....)))....((((((.......))))))...))))).. ( -5.61 = -5.05 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:37 2011