| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,429,890 – 21,429,962 |
| Length | 72 |
| Max. P | 0.619993 |
| Location | 21,429,890 – 21,429,962 |
|---|---|
| Length | 72 |
| Sequences | 7 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 78.22 |
| Shannon entropy | 0.43782 |
| G+C content | 0.42646 |
| Mean single sequence MFE | -14.98 |
| Consensus MFE | -8.33 |
| Energy contribution | -9.62 |
| Covariance contribution | 1.29 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.619993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21429890 72 - 27905053 UUCUAAAA-CGCUGCUCGAUCCGAAUCCAAAUCCAAAAGGUUCCAUAGGAU-UGGUUUCCUUGUCGAUUGCAUA ........-.((...(((((..(((.((((.(((.............))))-))).)))...)))))..))... ( -15.02, z-score = -1.16, R) >droSim1.chr3R 21258824 72 - 27517382 UUCUAAAA-CGCUGCUCGAUCCGAAUCCAAAUCCAAAAGGUUCCCUAGGAU-UGGUUUCCUUGUCGAUUGCAUA ........-.((...(((((..(((.((((.(((...(((...))).))))-))).)))...)))))..))... ( -16.60, z-score = -1.83, R) >droSec1.super_13 217722 72 - 2104621 UUCUAAAA-CGCUGCUCGAUCCGAAUCCAAAUCCAAAAGGUUCCCUAGGAU-UGGUUUCCUUGUCGAUUGCAUA ........-.((...(((((..(((.((((.(((...(((...))).))))-))).)))...)))))..))... ( -16.60, z-score = -1.83, R) >droYak2.chr3R 3783217 72 + 28832112 UUCUAAAA-CGCUGCUCGAUCCGAAUCCAAAUCCAAAAGGUUUCCUAGGAU-UGGUUUCCACGUCGAUUGCAUA ........-.((...(((((..(((.((((.(((...(((...))).))))-))).)))...)))))..))... ( -16.60, z-score = -1.73, R) >droEre2.scaffold_4820 3857814 72 + 10470090 UUCUAAAA-CGCUCUUCGAUCCGAAUCCAAAUCCAAAAGGUACCCUAGGAU-UGGUUUCCUUGUCGAUUGCAUA ........-.((...(((((..(((.((((.(((...(((...))).))))-))).)))...)))))..))... ( -17.30, z-score = -2.45, R) >droAna3.scaffold_13340 3686870 74 - 23697760 UGCUAAAACCUCCGUCCGAGCCUAAUCAAAAUCCAAAAGGUUCCAUCGGAUCCGAGUUCAUUCGCGAUUAAGUA ((((......((((...((((((..............))))))...))))((((((....)))).))...)))) ( -14.94, z-score = -1.86, R) >droPer1.super_3 3949797 70 - 7375914 UGCUAAAA--ACUGUU--GUCCCAUCUCAAUCUCCAGGGAAUCCAUGGAAUCCUCAUUCCUUAUCGAUUAUACC ........--..((..--.((((.............))))...)).(((((....))))).............. ( -7.82, z-score = 0.67, R) >consensus UUCUAAAA_CGCUGCUCGAUCCGAAUCCAAAUCCAAAAGGUUCCCUAGGAU_UGGUUUCCUUGUCGAUUGCAUA ..........((...(((((..(((.(((.((((.............)))).))).)))...)))))..))... ( -8.33 = -9.62 + 1.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:36 2011