| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,417,386 – 21,417,476 |
| Length | 90 |
| Max. P | 0.526619 |
| Location | 21,417,386 – 21,417,476 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 85.12 |
| Shannon entropy | 0.26284 |
| G+C content | 0.42711 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -15.40 |
| Energy contribution | -17.44 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.526619 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21417386 90 - 27905053 ACGCAAUUUUAUAAGAGGCGCCACCAAGUGCCGAGUAGCUACUUCUUUCAUAUGGAAAGUAAAGAGAGGUCCUCGAUGUAAAAUGUUCUA ..(((.(((((((...(((((......)))))(((.(.((.((((((((.....)))))....))))).).)))..)))))))))).... ( -20.80, z-score = -0.99, R) >droEre2.scaffold_4820 3845048 82 + 10470090 ----ACUUUCAUAAGAGGCGCCCCCAAGUGGCGAGUAGCU-UUCCUUUCCU-UGGAAAGU--AAAGAGGUCCUCGAUGUAAAAUUUUACA ----..........((((((((.......))))....(((-((((......-.)))))))--........))))..(((((....))))) ( -20.60, z-score = -1.11, R) >droYak2.chr3R 3770334 88 + 28832112 ACGCAAUUUCAUUAGAGGCGCCCCCAAGUGGCGAGUAGCUACUCCUUUCGUAUGGAAAGU--AAAGAGGUCCUCGAUGUAAAAUGUUCUA ..(((.(((((((.((((.(((....((((((.....)))))).(((((.....))))).--.....))))))))))).))).))).... ( -23.50, z-score = -1.48, R) >droSec1.super_13 205323 81 - 2104621 ACUCAAUUUUAUAAGAGGCGCCACCAAGUGGCGAGUAGCUACUCCUUUCGUAU---------AGAGAGGUCCUCGAUGUAAAAUUUUCUA ....(((((((((.((((((((((...))))))..........((((((....---------.)))))).))))..)))))))))..... ( -26.20, z-score = -3.53, R) >droSim1.chr3R 21246448 90 - 27517382 ACGCAAUUUUAUAAGAGGCGCCCUCAAGUGACGAGUAGCUACUCCUUUCGUAUGGAAAGUAAAGAGAGGUCCUCGAUGUAAAAUUUUCUA ....(((((((((.((((.((((((.......((((....))))(((((.....)))))....))).)))))))..)))))))))..... ( -25.00, z-score = -2.16, R) >consensus ACGCAAUUUUAUAAGAGGCGCCCCCAAGUGGCGAGUAGCUACUCCUUUCGUAUGGAAAGU__AGAGAGGUCCUCGAUGUAAAAUUUUCUA .....(((((((..((((.(((....((((((.....)))))).(((((.....)))))........)))))))...)))))))...... (-15.40 = -17.44 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:35 2011