| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,416,930 – 21,417,032 |
| Length | 102 |
| Max. P | 0.613321 |
| Location | 21,416,930 – 21,417,032 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 70.16 |
| Shannon entropy | 0.59990 |
| G+C content | 0.53068 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -14.16 |
| Energy contribution | -15.39 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21416930 102 + 27905053 UUGGGCUUUUGGCGUCGGGCGCAGGCGCAAUGGAAAAUGAGCUGGAAGGAAAAUGAAAGGAAAGGACAUUCG-----GGGGAUGUCCACACAAAAGGUACAGCAAUU (((.(((....(((.....))).))).)))..........((((...................(((((((..-----...)))))))..((.....)).)))).... ( -25.40, z-score = -1.23, R) >droAna3.scaffold_13340 3673022 101 + 23697760 ---UGAUAUUGUU-UAGGGCGCAGGCGCCCUGGAAG-UGAGAUUUUGCCAGGACGAGCAUAACGGGUGGGCGGGA-ACAGGAGGUCCUUACAAAAGGUACAGCAAUU ---....((((((-(((((((....)))))))...(-((...(((((..((((((..(((.....)))..)(...-.).....)))))..)))))..))))))))). ( -29.70, z-score = -1.12, R) >droEre2.scaffold_4820 3844559 102 - 10470090 UUGGGCCUUUGACGACAGGCGCAGGCGCGCUGGAAAAUGGGCUGGAUGGAAAAUGAGAGGAAAGGACAUUCG-----GGGGAUGUCCGCACAAGAGGUACAGCAAUU ((.(((((.......((((((....))).)))......))))).)).................(((((((..-----...)))))))((............)).... ( -27.42, z-score = -0.73, R) >droYak2.chr3R 3769837 107 - 28832112 UUGGGCUUUUGGCGUCAGGCGCAGGCGCGCUGGAAAAUGGGCUGGAAGGACAAUGAGAAGAAAGGACAUUCGAUUCGGGGGAUGUCCGCACAAAAGGUACAGCAAUU (((..((((..((.((.(((((....))))).))......))..))))..)))..........((((((((........))))))))((............)).... ( -31.40, z-score = -1.43, R) >droSec1.super_13 204846 102 + 2104621 UUGGGCUUUCGGCGUCGGGCGCAGGCGCAAUGGAAAAUGAGCUGGAAGGGAAAUGAGAGGAAAGGACAUUCG-----GGGGAUGUCCACACAAGAGGUACAGCAAUU (((.((((.((.(....).)).)))).)))..........((((...................(((((((..-----...)))))))..((.....)).)))).... ( -25.90, z-score = -1.00, R) >droSim1.chr3R 21245970 102 + 27517382 UUGGGCUUUCGGCGUCGGGCGCAGGCGCAAUGGAAAAUGAGCUGGAAGGAAAAUGAGAGGAAAGGACAUUCG-----GGGGAUGUCCACACAAAAGGUACAGCAAUU (((.((((.((.(....).)).)))).)))..........((((...................(((((((..-----...)))))))..((.....)).)))).... ( -25.90, z-score = -1.18, R) >droVir3.scaffold_12855 6813906 91 + 10161210 ---GUGUGUGGGUGCUGUGCGUGGGCACUGCGCA------GCUGCAUUGGAAGCAAGUGC--CGGACAGUUG-----AUGGCAAAACAAGCAAGUACAGCAGCAAUU ---.......(.((((((((.((((((((..((.------.((.....))..)).)))))--).....(((.-----.......)))...)).)))))))).).... ( -30.40, z-score = 0.77, R) >consensus UUGGGCUUUUGGCGUCGGGCGCAGGCGCAAUGGAAAAUGAGCUGGAAGGAAAAUGAGAGGAAAGGACAUUCG_____GGGGAUGUCCACACAAAAGGUACAGCAAUU ...........(((((.......)))))............((((...................((((((((........))))))))..((.....)).)))).... (-14.16 = -15.39 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:34 2011