| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,616,880 – 8,617,006 |
| Length | 126 |
| Max. P | 0.720970 |
| Location | 8,616,880 – 8,617,006 |
|---|---|
| Length | 126 |
| Sequences | 5 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 79.82 |
| Shannon entropy | 0.36847 |
| G+C content | 0.46094 |
| Mean single sequence MFE | -31.94 |
| Consensus MFE | -20.92 |
| Energy contribution | -23.12 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8616880 126 + 23011544 AUCUCGCUGUCAGUUUCUCCUGUACUA--------GUUAGAUAGUUGGAUUUACCCCAUCUCCCUUUUGAUAAUGUUCCUCUAAAAUUU-CCCGAGAUGGUCUUCUAUCUCGUGCAGGACCACAAGUAGCUGCCA .....((((...((...((((((((..--------((((((.((..((((.......))))..))))))))..................-...(((((((....)))))))))))))))..))...))))..... ( -29.80, z-score = -2.06, R) >droSim1.chr2L 8398957 134 + 22036055 AUCACGCUGUCAGUUUCUCCUGUAAAGUGUGUACUAUUGGAUAGUUGGAUUCCCCCCACCUGCCUUUUGGUGAUGUUCCUCUGAAAUUU-CCCGAGAUGGUCUUCUAUCUCGUGCAGGACCGCAAGUAGCUGCCA ..((((((..(((......)))...))))))......(((.((((((...........((((((....((.((..(((....)))...)-)))(((((((....)))))))).)))))..(....)))))))))) ( -38.40, z-score = -2.11, R) >droSec1.super_3 4096461 134 + 7220098 AUCACGCUGUCAGUUUCUCCUGUAAAGUGUGUACUAUUGGUUAGUUGGAUUC-CCCCACCUGCCUUUUGGUGAUUUUCCUUUUAAAUUUUCCCGAGAUGGUCUUCUAUCUCGUGCAGGACCGCAAGUAGCUGCCA ..((((((..(((......)))...))))))......((((.(((((.....-.....(((((.....((.(((((.......)))))..))((((((((....)))))))).)))))..(....)))))))))) ( -37.20, z-score = -2.69, R) >droYak2.chr2L 11259247 133 + 22324452 AGCCCGCAGACAGUUUCGCCUGUAAAGUGUUUACUAUCGAAUAGCUAGAUUUACCCUACAUCCCUUU-GGUAAUAUUUCUCUUAAAUUU-CCCGAGAUGGUAUUCUAUCGCGUGAAGGACCGCAAGUAGCUGCCA .....((((.(...((((...((((.....))))...))))..((.(((.(((((............-)))))....)))......(((-(.((.(((((....))))).)).))))....)).....))))).. ( -23.40, z-score = 1.19, R) >droEre2.scaffold_4929 9206776 122 + 26641161 -----------CGUUUCUCCCGCAAAGUUUAUACCAUCGGAUAGUUGGACUUACCCCACAUCCCUCU-GGUAAUAUUCCCCCCAAAUUU-CCCGAGAUGGUAUUCUAUCUCGUGCAGGACCGCAAGUAGCUGCCA -----------......(((.(((.......(((((..((((.((.((......)).))))))...)-)))).................-..((((((((....))))))))))).)))..(((......))).. ( -30.90, z-score = -2.31, R) >consensus AUCACGCUGUCAGUUUCUCCUGUAAAGUGUGUACUAUUGGAUAGUUGGAUUUACCCCACCUCCCUUUUGGUAAUAUUCCUCUUAAAUUU_CCCGAGAUGGUCUUCUAUCUCGUGCAGGACCGCAAGUAGCUGCCA ........(.(((((..(((((((.......(((((..((..((.(((.......))).))..))..)))))....................((((((((....))))))))))))))).(....).))))).). (-20.92 = -23.12 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:31 2011