| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,413,246 – 21,413,353 |
| Length | 107 |
| Max. P | 0.800050 |
| Location | 21,413,246 – 21,413,353 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.16 |
| Shannon entropy | 0.46342 |
| G+C content | 0.41087 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -19.08 |
| Energy contribution | -18.59 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21413246 107 - 27905053 CCCUGUGUCCUUUGCCUAAAUACUUCGAAAUUGGCCAAGCGUUUGUUGUGCA-CAUU--AAAUUGACAACGCUUAGCUGUGCUUGAGGUAG--CCAAACUGUUUCUACAUGC------- ...((((.............((((((((...((((.(((((((.((((....-....--....))))))))))).))))...)))))))).--............))))...------- ( -22.17, z-score = 0.31, R) >droSim1.chr3R 21242312 107 - 27517382 CCCUGUGUCCUUUGCCUAAAUACUUCGAAAUUGGCCAAGCGUUUGUUGUGCA-CUUU--AAAUUGACAACGCUUAGCUGUGCUUGAGGUAG--CCAAACUGUUUCUACAUGC------- ...((((.............((((((((...((((.(((((((.((((....-....--....))))))))))).))))...)))))))).--............))))...------- ( -22.17, z-score = 0.15, R) >droSec1.super_13 201191 107 - 2104621 CCCUGUGUCCUUUGCCUAAAUACUUCGAAAUUGGCCAAGCGUUUGUUGUGCA-CAUU--AAAUUGACAACGCUUAGCUGUGCUUGAGGUAG--CCAAACUGUUUCUACAUGC------- ...((((.............((((((((...((((.(((((((.((((....-....--....))))))))))).))))...)))))))).--............))))...------- ( -22.17, z-score = 0.31, R) >droYak2.chr3R 3766022 107 + 28832112 CCCUGUGUCCUUUGCCUAAAUACUUCGAAAUUGGCCAAGCGUUUGUUGUGCA-AAUU--CAAUUGACAACGCUUAGCUGUGCUUGAGGUAG--CCAAACUGUUUCAACAUGC------- ...(((..............((((((((...((((.(((((((.((((....-....--))))....))))))).))))...)))))))).--.............)))...------- ( -22.59, z-score = 0.23, R) >droEre2.scaffold_4820 3840786 107 + 10470090 CCCUGUGUCCUUUGCCUAAAUACUUCGAAAUUGGCCAAGCGCUUGUCGUGCA-CAUU--AAAUUGACAACGCUUAGCUGUGCCUGAGGUAG--CCAAACUGUUUCAACAUGC------- ...(((..............(((((((....((((.(((((.((((((....-....--....))))))))))).))))....))))))).--.............)))...------- ( -23.39, z-score = 0.04, R) >droAna3.scaffold_13340 3669042 96 - 23697760 --------AGUCUGCCUAAAUACUUCGAAAUUGGCUAAGCGUUUGUUGUGAU-UACC--AAAUUGACAAUGCUAAGCUGUGCUUGAGGUAG--CCAAGAUAAAUCUACA---------- --------.((((.......((((((((...(((((.((((((.(((.((..-...)--)....))))))))).)))))...)))))))).--...)))).........---------- ( -22.70, z-score = -1.20, R) >dp4.chr2 21156582 106 - 30794189 -UCUCCGUGCUUCGU-UAAAUACUUCGAAAUUGGUUAAGCGUUUGUUGUGCU-UAUU--AAACUGACAAAGCUUUGCCGUGCUUGAGGUAG-CCCUAAUUGAUUCCACAAAC------- -.....(((..((((-((..((((((((...((((.((((.((((((((...-....--..)).)))))))))).))))...)))))))).-...))).)))...)))....------- ( -25.30, z-score = -1.80, R) >droPer1.super_3 3931079 106 - 7375914 -UCUCCGUGCUUCGU-UAAAUACUUCGAAAUUGGUUAAGCGUUUGUUGUGCU-UAUU--AAACUGACAAAGCUUUGCCGUGCUUGAGGUAG-CCCUAAUUGAUUCCACAAAC------- -.....(((..((((-((..((((((((...((((.((((.((((((((...-....--..)).)))))))))).))))...)))))))).-...))).)))...)))....------- ( -25.30, z-score = -1.80, R) >droWil1.scaffold_181130 2019977 103 + 16660200 ----------------UAAAUACUUCGAAAUUGAUUAAGCGUUUGUUGUGUUCCAUUUCAAUUUGACUAUGCUUAACUAUGCUUGAGGUAGCCUCUAAUUGCUUCCCUUCUAUAUAUGC ----------------....((((((((...((.((((((((..((((.(((.......))).)))).)))))))).))...))))))))............................. ( -15.90, z-score = -0.60, R) >droVir3.scaffold_12855 6808867 98 - 10161210 ---------CCUUUUCUAAAUACCUUGAAAUUGGUUAAGCGUUUGUUGUGCU-UAUC--AAAUUGACGACGCUUAACUGUGCUUCAGGUAG--CCUAAUUGCUUCAACAAGC------- ---------...........(((((.(((..((((((((((((.((((....-....--....))))))))))))))))...)))))))).--.......((((....))))------- ( -22.70, z-score = -1.60, R) >droMoj3.scaffold_6540 8355552 99 + 34148556 ---------CCGUUGCUAAAUACUUCGAAAUUGGUUAAGCGUUUGUUGUGCU-UAUC-AAAAUUGACAACGCUUAACUGUGCUUGAGGUAG--CCUAAUUGUUUCAACAAGC------- ---------..((((.....((((((((...((((((((((((.((((....-....-.....))))))))))))))))...)))))))).--...........))))....------- ( -24.05, z-score = -1.43, R) >droGri2.scaffold_14906 2963136 98 - 14172833 ---------CCGGCGCUAAAUACUUCUGAAUUGGUUAAGCGUUUGUUGUGCU-UAUC--AAAUUGACAACGCUUAACUAUGCUUGAGGUAG--CCUAAUUGUUUCAACAAGC------- ---------..(((......((((((.....((((((((((((.((((....-....--....)))))))))))))))).....)))))))--))...((((....))))..------- ( -25.90, z-score = -1.91, R) >consensus __CU__GUCCUUUGCCUAAAUACUUCGAAAUUGGCUAAGCGUUUGUUGUGCU_UAUU__AAAUUGACAACGCUUAGCUGUGCUUGAGGUAG__CCAAAUUGUUUCAACAAGC_______ ....................((((((((...((((.(((((.((((((...............))))))))))).))))...))))))))............................. (-19.08 = -18.59 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:32 2011