| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,397,748 – 21,397,859 |
| Length | 111 |
| Max. P | 0.814950 |
| Location | 21,397,748 – 21,397,859 |
|---|---|
| Length | 111 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.63 |
| Shannon entropy | 0.37080 |
| G+C content | 0.41450 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -14.74 |
| Energy contribution | -14.32 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21397748 111 + 27905053 ------CUUUAAAUAUUUGCCGCACUAUCAAUAGAGUG--AAAGCCAAUCUUUUGAUGGAUGGCUCUA-CUCGUAAGAGGUUAAAUGCCUGCUUACACUGUUAUAUCCUUUUAUGCGACU ------..............((((.........(((((--..(((((.(((......)))))))).))-)))(((((((((.....)))).))))).................))))... ( -29.10, z-score = -2.91, R) >droSim1.chr3R 21226370 111 + 27517382 ------CUUUAAAUAUUUGCCGCACUAUCAAUAGAGUG--AAAGCCAAUCUUUUGAUGGAUGGCUCUA-CUCGUGAGAGGUUAAAUGCCUGCUUACACUGCCAUAUCCUUUUAUGCGACU ------..............(((((((((((.(((.((--.....)).))).)))))))(((((....-...(((((((((.....)))).)))))...))))).........))))... ( -30.50, z-score = -2.95, R) >droSec1.super_13 185713 111 + 2104621 ------CUUUAAAUAUUUGCCGCACUAUCAAUAGAGUG--AAAGCCAAUCUUUUGAUGGAUGGCUCUA-CUCGUGAGAGGUUAAAUGCCUGCUUACACUGCCAUAUCCUUUUAUGCGACU ------..............(((((((((((.(((.((--.....)).))).)))))))(((((....-...(((((((((.....)))).)))))...))))).........))))... ( -30.50, z-score = -2.95, R) >droYak2.chr3R 3749914 111 - 28832112 ------CUUUAAAUAUUUGCCGCACUAUCAAUGGAGUG--AAAGCCAAUCUUUUGAUGGAUGGCUCGA-CUUGUGAGAGGUUAAAUGCCUGCUUACACUGCCAUAUCCUUUUAUGCGACU ------..............(((((((((((.(((.((--.....)).))).)))))))(((((....-..((((((((((.....)))).))))))..))))).........))))... ( -31.90, z-score = -3.08, R) >droEre2.scaffold_4820 3825229 111 - 10470090 ------CUUUAAAUAUUUGCCGCACUAUCAAUAGACUG--AAAGCCAAUCUUUUGAUGGAUGGCUCUA-CUUGUGAGAGGUUAAAUGCCUGCUUACACUGCCAUAUCCUUUUAUGCGACU ------..............(((((((((((.(((.((--.....)).))).)))))))(((((....-..((((((((((.....)))).))))))..))))).........))))... ( -32.10, z-score = -4.28, R) >droAna3.scaffold_13340 3652997 117 + 23697760 UAGUAUAUUUAAAUAUUUGCUCCUACAUCAAUUGAGUG--AAAGCCAAUCAUCUGAUGGAUGGCCCUG-CUUAGGAGAGGUUAAAUGCCUGCUUAGACGCACAUAUCCUUUUAGGCCACU .((((.((......)).))))....(((((..(((.((--.....)).)))..)))))..(((((...-...((((.((((.....))))((......)).....))))....))))).. ( -26.70, z-score = -0.20, R) >droPer1.super_3 3910922 105 + 7375914 -------UUUAAAUAUUGACCCGCCCGUCGAUUGAGGGGAAAAGGCAAUCCUCUGAUGGAUGGCUCAAACAUCCGAGAGGUUAAAUGCCUACUUA--------UAUCCUUUCCAGGAGCU -------................(((.((....)).)))...(((((..(((((..((((((.......))))))))))).....))))).....--------..((((....))))... ( -30.30, z-score = -1.16, R) >dp4.chr2 21136375 105 + 30794189 -------UUUAAAUAUUGACCCGCCCGUCGAUUGAGGGGAAAAGGCAAUCCUCUGAUGGAUGGCUCAAACAUCCGAGAGGUUAAAUGCCUACUUA--------UAUCCUUUCCAGGAGCU -------................(((.((....)).)))...(((((..(((((..((((((.......))))))))))).....))))).....--------..((((....))))... ( -30.30, z-score = -1.16, R) >consensus ______CUUUAAAUAUUUGCCGCACUAUCAAUAGAGUG__AAAGCCAAUCUUUUGAUGGAUGGCUCUA_CUUGUGAGAGGUUAAAUGCCUGCUUACACUGCCAUAUCCUUUUAUGCGACU ..................(((...((((((..(((.............)))..))))))..)))..........(((((((.....)))).))).......................... (-14.74 = -14.32 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:31 2011