| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,392,788 – 21,392,885 |
| Length | 97 |
| Max. P | 0.945613 |
| Location | 21,392,788 – 21,392,885 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 83.60 |
| Shannon entropy | 0.33764 |
| G+C content | 0.40460 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -16.54 |
| Energy contribution | -17.43 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945613 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21392788 97 - 27905053 UGCUGCUGUCGAUUCGCU-GCAAACAAUAAAUUCUGUUUGCCAUCGAAGGAGAGGAAAUUAAGCCAAUAUUGCGUAUACGCAAUGUAGGAAAUUAAGU .....((.((..((((..-(((((((........)))))))...)))).)).))....((((.((.((((((((....)))))))).))...)))).. ( -28.00, z-score = -2.63, R) >droWil1.scaffold_181130 1998635 96 + 16660200 -CACGCAGGCAGUCAGUUAGCAAACACUUAAUUCUCUUUGUCGU-GAGGGCAAGGAAAUUAGAGGCACAUUGCGUAUACGCCGAGUAGGAAAUUAAGU -.((((((...(((.(((....)))..((((((.((((((((..-...)))))))))))))).)))...)))))).....((.....))......... ( -22.40, z-score = -0.93, R) >droSim1.chr3R 21221406 97 - 27517382 UGUUCCUGUCGAUUCGCU-GCAAACAAUAAAUUCUGUUUGCCAUCGAAGGAGAGGAAAUUAAGCCAAUAUUGCGUAUACGCAAUGUAGGAAAUUAAGU ..(((((.((..((((..-(((((((........)))))))...)))).)).))))).((((.((.((((((((....)))))))).))...)))).. ( -33.60, z-score = -5.20, R) >droSec1.super_13 180706 97 - 2104621 UGUUCCCGUCGAUUCGCU-GCAAACAAUAAAUUCUGUUUGCCAUCGAAGGAGAGGAAAUUAAGCCAAUAUUGCGUAUACGCAAUGUAGGAAAUUAAGU ..((((..((..((((..-(((((((........)))))))...)))).))..)))).((((.((.((((((((....)))))))).))...)))).. ( -29.90, z-score = -3.94, R) >droYak2.chr3R 3744866 97 + 28832112 CGCUGCUGUCGUUUCGCU-GCAAACAAUAAAUUCUGUUUGCCAUCGAAGGAGAGGAAAUUAAGCCAAUAUUGCGUAUACGCAGAGUAGGAAAUUAAGU .....((.((.(((((..-(((((((........)))))))...))))))).))....((((.((.((.(((((....))))).)).))...)))).. ( -24.40, z-score = -1.15, R) >droEre2.scaffold_4820 3820320 97 + 10470090 UGCUUCUGUCGAUUCGCA-GCAAACAAUAAAUUCUGUUUGCCAUCGAAGGAGAGGAAAUUAAGCCAAUAUUGCGUAUACGCAAAGUAGGAAAUUAAGU ...((((.((..((((..-(((((((........)))))))...)))).)).))))..((((.((.((.(((((....))))).)).))...)))).. ( -25.90, z-score = -2.61, R) >droAna3.scaffold_13340 3648035 94 - 23697760 UGCUGCUGCCGAUUCAGU-GCGAGCCAUAAAUUCUGUUUGCCAUUCAAGGAAAUUAACUC---CCUGUAUUGCGUAUACGCAGUGUAGGAAAUUAAGU .((.((((......))))-))(((...(((.((((..(((.....))))))).))).)))---(((((((((((....)))))))))))......... ( -20.40, z-score = -0.09, R) >consensus UGCUGCUGUCGAUUCGCU_GCAAACAAUAAAUUCUGUUUGCCAUCGAAGGAGAGGAAAUUAAGCCAAUAUUGCGUAUACGCAAUGUAGGAAAUUAAGU ...((((.((..((((...(((((((........)))))))...)))).)).)))).......((.((.(((((....))))).)).))......... (-16.54 = -17.43 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:28 2011