| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,381,357 – 21,381,452 |
| Length | 95 |
| Max. P | 0.594731 |
| Location | 21,381,357 – 21,381,452 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 73.99 |
| Shannon entropy | 0.50288 |
| G+C content | 0.51016 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -11.54 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21381357 95 + 27905053 CUGAGAGGACUCUUCACGAGAAGGGUAUCACAAACGA----GUGGAAGGAAGCCA-GCUGAAAAGGCAGAACUGGCUGCCAU---UCGACGUCCGUCCGUCUG .((.((..(((((((....))))))).)).))...((----((((.....(((((-((((......)))..)))))).))))---))((((......)))).. ( -33.40, z-score = -1.70, R) >droSim1.chr3R 21210078 95 + 27517382 CUGAGAGGACCCUUAACGAGAAGAGUAUUACAAACGA----GUGGAAGGAAGCCA-GCUGAAAAGGCAGAACUGGCUGCCAU---UCGACGUCCGUCCGUCAG ((((..((((.(((......)))...........(((----((((.....(((((-((((......)))..)))))).))))---)))......)))).)))) ( -30.60, z-score = -2.37, R) >droSec1.super_13 169424 95 + 2104621 CUGAGAGGACCCUUAACGAGAAGGGUAUCACAAACGA----GUGGAAGGAAGCCA-GCUGAAAAGGCAGAACUGGCUGCCAU---UCGACGUCCGUCCGUCAG ((((..((((((((......))))..........(((----((((.....(((((-((((......)))..)))))).))))---)))......)))).)))) ( -34.10, z-score = -2.57, R) >droYak2.chr3R 3733151 95 - 28832112 CUAAAAGGACCCUUCAAGAGAAGGGUAUCACAAACGA----GUGGAAGGAAGCCA-GCUGAAAAGGCAGAACUGGCUGCCAU---UCGACGUCCGUCCGUCAG ......(((((((((....))))))).))......((----((((.....(((((-((((......)))..)))))).))))---))((((......)))).. ( -35.20, z-score = -3.38, R) >droEre2.scaffold_4820 3808728 95 - 10470090 CUGAGAGGACCCUUCAGGAGAAGGGUAUCACAAACGA----GUGGAAGGAAGCCA-GCUGAAAAGGCAGAACUGGCUGCCAU---UCGACGUCCGUCCGUCAG ((((..(((((((((....)))))..........(((----((((.....(((((-((((......)))..)))))).))))---)))......)))).)))) ( -37.20, z-score = -2.95, R) >droAna3.scaffold_13340 3637051 91 + 23697760 AUAAAGGUAAACUUUUUG-GAAGAGUAUUAAAGUUGA----GUUAAAGGAAACGC-UCCAAAAAGGCAUAACUGCUUGCCAAG--UCGACGUCCGUCAG---- .....(((((.(((((((-((......((((......----.)))).(....)..-)))))))))(((....))))))))...--..(((....)))..---- ( -20.70, z-score = -1.36, R) >dp4.chr2 21114902 102 + 30794189 AGUAUAGUACACUCUGCAGGGGCUAUAAGAAAGGAAAAAACGAAGAAGGAAACGAAGCUGAAAAGGCAGAACUGGCUGCUGCCAGUCGUCGUC-GUCCGUCAC ..((((((...(((....))))))))).................((.(((.((((.(((.....))).((.(((((....))))))).)))).-.))).)).. ( -26.10, z-score = -0.54, R) >droPer1.super_3 3889433 102 + 7375914 AGUAUAGUACACUCUGCAGGGGCUAUAAGAAAGGAAAAAACGAAGAAGGAAACGAAGCUGAAAAGGCAGAACUGGCUGCUGCCAGUCGUCGUC-GUCCGUCAC ..((((((...(((....))))))))).................((.(((.((((.(((.....))).((.(((((....))))))).)))).-.))).)).. ( -26.10, z-score = -0.54, R) >consensus CUGAGAGGACCCUUCACGAGAAGGGUAUCACAAACGA____GUGGAAGGAAGCCA_GCUGAAAAGGCAGAACUGGCUGCCAU___UCGACGUCCGUCCGUCAG ..........(((((....)))))...................(((.(((..............(((((......)))))...........))).)))..... (-11.54 = -11.70 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:26 2011