| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,378,586 – 21,378,687 |
| Length | 101 |
| Max. P | 0.846916 |
| Location | 21,378,586 – 21,378,687 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 71.33 |
| Shannon entropy | 0.55081 |
| G+C content | 0.35216 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -7.98 |
| Energy contribution | -9.37 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21378586 101 - 27905053 ----------AAACAUUUCAGCACUCUUGACAUGGAAACAAGAACAAAUGCGAAUGCA-UUUGGCUGAAGAUAUUAAUGUGUCUGC-ACGAGUGUUGAAAAACAACAAUGACU ----------.....(((((((((((......((....))....(((((((....)))-))))((...((((((....))))))))-..)))))))))))............. ( -30.50, z-score = -4.20, R) >droSim1.chr3R 21207343 101 - 27517382 ----------AUAUAUUUCAGCACUCUUGACAUGGAAACAAGAACAAAUGCGAAUGCA-UUUGGCUGAAGAUUUUAAUGUGUCUGC-GCGAGUGUUGAAAAACAGCAAUGACU ----------.....(((((((((((......((....))....(((((((....)))-))))((...((((........))))..-)))))))))))))..((....))... ( -30.60, z-score = -3.30, R) >droSec1.super_13 166783 101 - 2104621 ----------AUAUAUUUCAGCACUCUUGACAUGGAAACAAGAACAAAUGCGAAUGCA-UUUGGCUGAAGAUAUUAAUGUGUCUGC-GCGAGUGUUGAAAAAUAGCAAUGACU ----------.(((.(((((((((((......((....))....(((((((....)))-))))((...((((((....))))))..-))))))))))))).)))......... ( -33.00, z-score = -4.50, R) >droYak2.chr3R 3730285 109 + 28832112 AUACAUGGCUGUAUAUUUCAGCACUCUUGACAUGGAAA-CAAGAAAAAUGCGAAUGCA-UUUGGCUGAAGAUAUUAAUGUAUCUGC-CCAAGUGUUGAACAA-GGGAAUGACU ...(((.((((.......)))).((((((...((....-))..............(((-(((((....((((((....))))))..-))))))))....)))-))).)))... ( -29.00, z-score = -2.45, R) >droEre2.scaffold_4820 3805932 98 + 10470090 ------------AUAUUUCAGCACUCUUGACAUGGAAACCAGAAAAAAUGCGAAUGCA-UUUGGCUGAAGAUAUUAAUGUGUCUGC-CCAAGUGUUGAGCAA-AGGAAUGACU ------------....(((((((((.......(((....(((...((((((....)))-)))..))).((((((....))))))..-))))))))))))...-.......... ( -24.11, z-score = -1.58, R) >droAna3.scaffold_13340 3634296 97 - 23697760 ----------AUAUAUUUUAGUACUCUUGACAUGGAA---AGAACAAAUGCGAAUGCAUUUUUACUGAAGAUAUUAAUGUGUGUCUGUCAAGUGCUCAAUGA-AAAAGCUG-- ----------...((((..((((((..((((......---.....((((((....)))))).......((((((......)))))))))))))))).)))).-........-- ( -17.80, z-score = -0.39, R) >droPer1.super_3 3886064 88 - 7375914 ----------ACAUAUUUUG------UUUAUAUGCAAAUUGUAUCGCAUUACAAAGCU-CUACGCUGAAGAUUUCAUUCUGAAACA-UCAAUUAAUAAUCGAUAUU------- ----------......((((------(......)))))..((((((.((((...(((.-....)))((.(.((((.....))))).-))......)))))))))).------- ( -11.70, z-score = -0.29, R) >consensus __________AUAUAUUUCAGCACUCUUGACAUGGAAACAAGAACAAAUGCGAAUGCA_UUUGGCUGAAGAUAUUAAUGUGUCUGC_CCAAGUGUUGAAAAA_AGCAAUGACU ................(((((((((..............................((......))...((((((....))))))......))))))))).............. ( -7.98 = -9.37 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:25 2011