| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,375,400 – 21,375,451 |
| Length | 51 |
| Max. P | 0.836161 |
| Location | 21,375,400 – 21,375,451 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 87.91 |
| Shannon entropy | 0.19459 |
| G+C content | 0.47549 |
| Mean single sequence MFE | -15.75 |
| Consensus MFE | -12.70 |
| Energy contribution | -12.57 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.836161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21375400 51 - 27905053 UUAACAUUGGGGCGGAAGUAGGGCGGGAACAUCUAUUUCCUAGCCAAAUUG ..........((((((((((((..(....).)))))))))..)))...... ( -16.00, z-score = -2.70, R) >droYak2.chr3R 3726882 51 + 28832112 UUAGCUUUUGGGCGGAAGCAGGGCGGGAAAAUCUAUUUCCUAGCUAAAAUG ((((((.....((....)).....((((((.....)))))))))))).... ( -14.80, z-score = -1.57, R) >droSec1.super_13 163630 51 - 2104621 UUAACUUUGGUGCGGAAGUGGGGCGGGAAAAUCUAUUUCCUAGCCGAAUUG .....((((((..(((((((((.........)))))))))..))))))... ( -15.30, z-score = -1.85, R) >droSim1.chr3R 21204128 51 - 27517382 UUAACUCUGGGGCGGAAGUAGGGCGGGAAAACCUAUUUCCUAGCCGAAUUG ..........((((((((((((.........)))))))))..)))...... ( -16.90, z-score = -1.62, R) >consensus UUAACUUUGGGGCGGAAGUAGGGCGGGAAAAUCUAUUUCCUAGCCAAAUUG ...........((....))..(((((((((.....)))))).)))...... (-12.70 = -12.57 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:24 2011