| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,614,383 – 8,614,459 |
| Length | 76 |
| Max. P | 0.601915 |
| Location | 8,614,383 – 8,614,459 |
|---|---|
| Length | 76 |
| Sequences | 4 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 62.00 |
| Shannon entropy | 0.63732 |
| G+C content | 0.32286 |
| Mean single sequence MFE | -11.35 |
| Consensus MFE | -7.10 |
| Energy contribution | -7.60 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.21 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.601915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8614383 76 - 23011544 ---ACGUGCUCAAAUAAGCUCCUUCUACUCUUAGAAUUUCAUUUAAUAUGAUGUGGUAUGUGUUAUGCGUUCUAGAUCA ---..(.(((......))).).(((((....)))))............((((.(((.((((.....)))).))).)))) ( -11.40, z-score = -0.15, R) >droSec1.super_3 4093898 63 - 7220098 ----------------AGUUCCAUCUACUCUUAGAAUUUCAUUUAAUAUGAUGUGGUAUGUGUUAUGCGUUUUAGAUCA ----------------.......((((....)))).............((((.(((.((((.....)))).))).)))) ( -7.00, z-score = 0.59, R) >droYak2.chr2L 11256564 75 - 22324452 ACGUGUUUCAAUAAGUGACUACAUUUAAGAAUAGGAUCAAAUUUAACUUGAUUU----CGUAUUAUGCGUUCUAGAUCA ((((((.....((((((....))))))...((..((((((.......)))))).----.))...))))))......... ( -9.70, z-score = 0.44, R) >droEre2.scaffold_4929 9204390 79 - 26641161 ACGUGCUCACAUAAGUUGCUACAUUUAUGAACCCUAUUUAAUUUAAUAUGAUUUGGUGUGCGUUAAGCGUUCCAGAUCA .........(((((((......)))))))...................((((((((..(((.....)))..)))))))) ( -17.30, z-score = -1.73, R) >consensus ___UG_U_C_AUAAGUAGCUACAUCUACGAAUAGAAUUUAAUUUAAUAUGAUGUGGUAUGUGUUAUGCGUUCUAGAUCA ................................................((((((((.((((.....)))).)))))))) ( -7.10 = -7.60 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:30 2011