| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,348,339 – 21,348,442 |
| Length | 103 |
| Max. P | 0.553309 |
| Location | 21,348,339 – 21,348,442 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.39 |
| Shannon entropy | 0.47450 |
| G+C content | 0.55261 |
| Mean single sequence MFE | -23.18 |
| Consensus MFE | -12.52 |
| Energy contribution | -13.52 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21348339 103 + 27905053 GACUGACAGCUACAACGGCUGUUCUUAUUAAGGUAGCAACACCGCACCACCGUGCCCCACCGAGCAGAGCACCACCAUUGAUGAUAGUGGCAC-CAACCACCCA ....(((((((.....))))))).((((((((((.((......)))))...((((.(.........).)))).....)))))))..((((...-...))))... ( -23.10, z-score = -0.82, R) >droSim1.chr3R 21178816 83 + 27517382 GACUGACAGCUACAACGGCUGUUCUUAUAAGG--AGCAGCAC-GCAC-ACGGUGCA---------CGAGUGAGACCAC-AUGACGAGUGGCACAACA------- ........(((((..((((((((((.....))--))))))..-((((-...)))).---------)).(((....)))-.......)))))......------- ( -27.10, z-score = -2.41, R) >droSec1.super_13 135022 101 + 2104621 GACUGACAGCUACAACGGCUGUUCUUAUUAAGGUAGCACCACCGCACCACCGUGC--CACCGAGUGGAGCACGACCAUUGACGAUAGUGGCAC-CAACCACCCA ....(((((((.....)))))))........(((.((......)))))...((((--((((((((((.......)))))..))...)))))))-.......... ( -27.80, z-score = -1.47, R) >droYak2.chr3R 3698672 101 - 28832112 GACUGACAGCUACAACGGCUGUUCUUAUUAAGGUAGCACCACCGAACCACCGCAC--CACCGAGCAGAGCACCACCACUGACGAUAGUGGCAG-CAACCACCCA ....(((((((.....)))))))........(((.((..............((..--......)).........((((((....))))))..)-).)))..... ( -21.80, z-score = -0.96, R) >droEre2.scaffold_4820 3773903 85 - 10470090 GACUGACAGCUACAACGGCUGUUCUUAUUAAGGUAGCACCACCGCACCACCGAGC------------------ACCACUGACGAUAGUGGCAC-CAACCACCCA ....(((((((.....)))))))........(((.((......))))).......------------------.((((((....))))))...-.......... ( -18.70, z-score = -0.96, R) >droAna3.scaffold_13340 3604665 91 + 23697760 GACUGACAGCUACAACGGCUGUUCUUAUUAAGGUAGAGCAGCAGCACCACCAAAA-------------GCUCCACCACCAUCGAUAGUGGCACACCACCGCCCA .((((((((((.....)))))).........(((.((((................-------------)))).)))........))))(((........))).. ( -20.59, z-score = -1.06, R) >consensus GACUGACAGCUACAACGGCUGUUCUUAUUAAGGUAGCACCACCGCACCACCGUGC___________GAGCACCACCACUGACGAUAGUGGCAC_CAACCACCCA ....(((((((.....)))))))........(((.((......)))))..........................((((((....)))))).............. (-12.52 = -13.52 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:21 2011