| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,347,460 – 21,347,572 |
| Length | 112 |
| Max. P | 0.978158 |
| Location | 21,347,460 – 21,347,572 |
|---|---|
| Length | 112 |
| Sequences | 11 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 70.32 |
| Shannon entropy | 0.60693 |
| G+C content | 0.35647 |
| Mean single sequence MFE | -28.66 |
| Consensus MFE | -14.80 |
| Energy contribution | -14.01 |
| Covariance contribution | -0.79 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978158 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 21347460 112 + 27905053 -GCUUAAUUGUGCGUUGUUUUAACUGCAUUU------AGUGCAGGCGUAAUUAGCCAAAUUGUUAACUUAAUUAUUUUCGG----CUUUUUACGCACAGUUUG-CUACGCAAAUGGCUGUGAAU -(((......(((((.((.....((((((..------.))))))((((((..((((((((.((((...)))).))))..))----))..)))))).......)-).)))))...)))....... ( -31.80, z-score = -1.86, R) >droSim1.chr3R 21177972 112 + 27517382 -GCUUAAUUGUGCGUUGUUUUAACUGCAUUU------AGUGCAGGCGUAAUUAGCCAAAUUGUUAACUUAAUUAUUUUCGG----CUUCUUACGCACAGUUUG-CUUCGCAAAUGGCUGUGAAU -((..((((((((..........((((((..------.))))))..((((..((((((((.((((...)))).))))..))----))..)))))))))))).)-)((((((......)))))). ( -32.90, z-score = -2.45, R) >droSec1.super_13 134187 101 + 2104621 UUGUUAAUUGUGCGUUGUUUUAACUGCAUUU------AGUGCAGGCGUAAAUAGCCAAAUUGUUAACUUAAUUAUUUUCGG----CUUCUUACGCACAGUUUG---CUGUGAAU---------- ..((.((((((((..........((((((..------.))))))..((((..((((((((.((((...)))).))))..))----))..)))))))))))).)---).......---------- ( -27.50, z-score = -2.16, R) >droYak2.chr3R 3697801 112 - 28832112 -GCUUAAUUGUGCGUUGUUUUAACUGCAUUU------AGUGCAGGCGUAAUUAGCCAAAUUGUUAACUUAAUUAUUUUUGG----CAUCUUACGCACAGUUUG-CUUUGCAAAUGGCUGUGAAU -((..((((((((((........((((((..------.)))))).........((((((..((((...))))....)))))----).....)))))))))).)-)((..((......))..)). ( -30.90, z-score = -1.38, R) >droEre2.scaffold_4820 3773033 112 - 10470090 -GCUUAAUUGUGCAUUGUUUUAACUGCAUUU------AGUGCAGGCGUAAUUAGCCAAAUUGUUAACUUAAUUAUUUUUGG----CUUCUUACGCACAGUUUG-CGUUGCAAAUGGCUGUGAAU -((..((((((((..........((((((..------.))))))..((((..(((((((..((((...))))....)))))----))..)))))))))))).)-).(..((......))..).. ( -33.40, z-score = -2.22, R) >droAna3.scaffold_13340 3603849 111 + 23697760 -GGUUAAUUGUGCGUUCGUUUAAAUGCAUUU------AGUCCGAGCAUAAUUAGCCAAAUUGUUAACUUGAAUAUUUUAGU----UUCGGUAGGCACAGUUGG-UUACUCAAUUGGCUGUGAA- -((((((((((((..(((.(((((....)))------))..))))))))))))))).........(((.((((......))----)).)))...((((((..(-((....)))..))))))..- ( -31.60, z-score = -3.00, R) >droPer1.super_3 3844239 109 + 7375914 -GGUUAAUUGUGCGUUGGUUUAAAUGCAUUU------AGUGCAGUCGUAAUUAGCCAAAUUGUUAACUUAAUUAUUUUUGGGCCACAUCUAAUGCAUAGUUUGGCUUCACGAAUGG-------- -(((((((..((.(((((((....(((((..------.))))).....)))))))))....)))))))....(((((.(((((((...(((.....)))..)))).))).))))).-------- ( -24.20, z-score = -0.50, R) >dp4.chr2 21070987 109 + 30794189 -GGUUAAUUGUGCGUUGGUUUAAAUGCAUUU------AGUGCAGUCGUAAUUAGCCAAAUUGUUAACUUAAUUAUUUUUGGGCCACAUCUUAUGCAUAGUUUGGCUUCACGAAUGG-------- -.((.....(((((((......)))))))..------...))..((((....(((((((((((...(((((......)))))...(((...))).)))))))))))..))))....-------- ( -23.50, z-score = -0.29, R) >droWil1.scaffold_181130 14717980 121 + 16660200 -GUUAAAUUGUGCGUAUGGCGAAUGGCAUUUUUUCGUAAUGCAAGCAUAAUUAGCUUAAUUGUUAUCUUAAUUAUUUU-GCCUCUUGUCUUAUGCAUAGUUGAAUGAC-UAAGUAGAUGUGACU -(((((((((((((((.(((((..((((..............((((.......))))(((((......)))))....)-)))..))))).)))))))))))...))))-............... ( -28.00, z-score = -1.25, R) >droVir3.scaffold_12855 3451273 87 - 10161210 -GCUUAAUUGUGCCGCGGU-----GACAUU------AAAUGUGAGCGUAAUUAGCUUAAUUAUGAUUUUAAUUAUUUUGUC----UGUGCUACGCAUAAUUGG--------------------- -...(((((((((.(((..-----((((.(------((.((....((((((((...))))))))....)).)))...))))----..)))...))))))))).--------------------- ( -19.30, z-score = -0.88, R) >droGri2.scaffold_14906 11292957 109 - 14172833 -GCUUAAUUGUGUCGCGGU-----GGCAUUU-----AAAUGCCAGCGUAAUGAGUUUAAUUAUGAUUUUAAUUAUCUUGUA----UAUGGCACGCACAAGUGGGUGACCAAAAUACAUGUGACU -........((((((((.(-----(((((..-----..)))))).))).(..((..((((((......)))))).))..).----...))))).((((..(((....))).......))))... ( -32.20, z-score = -2.28, R) >consensus _GCUUAAUUGUGCGUUGGUUUAACUGCAUUU______AGUGCAGGCGUAAUUAGCCAAAUUGUUAACUUAAUUAUUUUUGG____CUUCUUACGCACAGUUUG_CUUCGCAAAUGGCUGUGAAU .....((((((((...........((((((.......))))))(((.......))).....................................))))))))....................... (-14.80 = -14.01 + -0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:20 2011