| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,345,372 – 21,345,480 |
| Length | 108 |
| Max. P | 0.723573 |
| Location | 21,345,372 – 21,345,480 |
|---|---|
| Length | 108 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 74.09 |
| Shannon entropy | 0.56460 |
| G+C content | 0.58081 |
| Mean single sequence MFE | -38.96 |
| Consensus MFE | -23.28 |
| Energy contribution | -22.37 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21345372 108 - 27905053 ----UUUUCCGUCGUGGAAAGUGGAAAACUCACCUUAGAUUUGGGACAGCCGCCGCUGCUGCCGCCGCCGCCUGCAGGGGCGGGGGCACGUUGUACGGAAAGGGCAACUUGG ----..((((((((..(...((((.....((.((........))))...))))..)..)((((.(((((.((....))))))).))))....).))))))(((....))).. ( -42.40, z-score = -0.08, R) >droSim1.chr3R 21175960 108 - 27517382 ----UUUUCCGUCGUGGAAAGUGGAAAACUCACCUUAGAUUUGGGACAGCCGCCGCUGCUGCCGCCGCCGCCUGCAGGGGCGGGGGCACGUUGUACGGAAAGGGCAACUUGG ----..((((((((..(...((((.....((.((........))))...))))..)..)((((.(((((.((....))))))).))))....).))))))(((....))).. ( -42.40, z-score = -0.08, R) >droSec1.super_13 132266 108 - 2104621 ----UUUUCCGUCGUGGAAAGUGGAAAACUCACCUUAGAUUUGGGACAGCCGCCGCUGCUGCCGCCGCCGCCUGCAGGGGCGGGGGCACGUUGUACGGAAAGGGCAACUUGG ----..((((((((..(...((((.....((.((........))))...))))..)..)((((.(((((.((....))))))).))))....).))))))(((....))).. ( -42.40, z-score = -0.08, R) >droYak2.chr3R 3695719 108 + 28832112 ----UUUGCCGUCGUGUAAAGUGGAAAACUCACCUUAGAUUUGGGACAGCCGCCGCUGCUGCCGCCGCCGCCUGAAGGGGCGGGGGCACGUUGUACGGAAAGGGCAACUUGG ----.((((((((((.(((.((((.....)))).))).))....)))..(((..((.((((((.(((((.((....))))))).)))).)).)).)))....)))))..... ( -41.60, z-score = -0.04, R) >droEre2.scaffold_4820 3770989 108 + 10470090 ----UUUGCCGUCGUGGAAAGUGGAAAACUCACCUUAGAUUUGGGACAGCCGCCGCUGCUGCCGCCGCCGCCUGGAGAGGCGGGGGCACGUUGUACGGAAAGGGCAACUUGG ----.(((((.((((((..(((((.....((.((........))))......)))))....))(((.((((((....)))))).))).......))))....)))))..... ( -40.60, z-score = 0.25, R) >droAna3.scaffold_13340 3602005 100 - 23697760 ----------GUUUUUGGAAAU--AAGACUUACCUUAAAUUUGGCACAGCAGCGGCUGCUGCUGCCGCCGCCUGAAGAGGCGGUGGCACGUUGUAUGGAAACGGCAACUUUG ----------....(..((..(--(((......))))..))..)...((((((....))))))((((((((((....))))))))))..(((((.((....))))))).... ( -40.10, z-score = -3.08, R) >dp4.chr2 21067528 107 - 30794189 -----GUGCAAAGCAAAAGGACUGCCAACUCACCUUAAAUUUGGCACAGCUGCCGCUGCUGCCGCUGCCGCCUGGAGAGGCGGCGGCACAUUGUAUGGAAACGGCAACUUGG -----.(((...))).(((...((((................((((((((....)))).))))((((((((((....)))))))))).........(....))))).))).. ( -43.00, z-score = -1.69, R) >droPer1.super_3 3840749 107 - 7375914 -----GUGCAAAGCAAAAGGACUGCCAACUCACCUUAAAUUUGGCACAGCUGCCGCUGCUGCUGCUGCCGCCUGGAGAGGCGGCGGCACAUUGUAUGGAAACGGCAACUUGG -----((((((((((.......((((((............))))))((((....)))).))))((((((((((....))))))))))...))))))(....)(....).... ( -41.60, z-score = -1.42, R) >droWil1.scaffold_181130 1938556 81 + 16660200 ----------------------------CUUACCUUAAAUUUGGCACGGCCGC---AGCUGCUGCUGCUGCUUGUAAGGGCGGCGGCACAUUAUAUGGGAAUGGCAACUUUG ----------------------------.......((((.(((.((...((((---....))(((((((((((....))))))))))).........))..)).))).)))) ( -24.80, z-score = -0.00, R) >droVir3.scaffold_12855 6708503 112 - 10161210 UUUUUUUUCGUGGAGAGUAUCUUUUUGGCUUACCUUAAAUUUGGCACAGCUGCGGCAGCGGCGGCCGCCGCUUGCAGAGGCGGCGGCACAUUGUAUGGAAACGGCAGCUUGG .........(((..((((.........)))).((........)))))((((((.((((.(...((((((((((....)))))))))).).)))).((....))))))))... ( -39.90, z-score = -0.65, R) >droMoj3.scaffold_6540 8266733 84 + 34148556 ----------------------------CUUACCUUAAAUUUGGCACAGCUGCGGCAGCGGCGGCCGCCGCUUGCAGAGGCGGCGGCACAUUAUAUGGAAAAGGCAGCUUGG ----------------------------....((........))((.((((((.((....)).((((((((((....))))))))))................)))))))). ( -33.50, z-score = -1.12, R) >droGri2.scaffold_14906 2878492 95 - 14172833 -----------------UUUUGGUUGAUCUUACCUUAAAUUUGGCACAGCUGCGGCAGCAGCAGCCGCUGCUUGCAGAGGCGGCGGCACAUUGUAUGGAAACGGCAACUUGG -----------------....(((((.((...((........)).((((((((....))))).((((((((((....))))))))))....)))..(....))))))))... ( -35.20, z-score = -1.48, R) >consensus _____UU_CCGUCGUGGAAAGUGGAAAACUCACCUUAAAUUUGGCACAGCCGCCGCUGCUGCCGCCGCCGCCUGCAGAGGCGGCGGCACAUUGUAUGGAAACGGCAACUUGG ................................((........))....(((((....))....(((.((((((....)))))).)))...............)))....... (-23.28 = -22.37 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:19 2011