| Sequence ID | dm3.chr3R |
|---|---|
| Location | 21,316,569 – 21,316,682 |
| Length | 113 |
| Max. P | 0.575764 |
| Location | 21,316,569 – 21,316,682 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.34 |
| Shannon entropy | 0.50626 |
| G+C content | 0.62766 |
| Mean single sequence MFE | -46.60 |
| Consensus MFE | -31.10 |
| Energy contribution | -32.27 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.68 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 21316569 113 + 27905053 CAGCUGCGAAUCGAUAUUCGGCAAUUUGACGGCUGGGUGGCUGCGCGGCGGCCUCUGCACGGUGCGAGCGCCGCAUUGGGGUUCCUCCGCGCUCAGCUGUUCAUGCGCGCUUG .(((.((((((....)))).(((....((((((((((.((((((...)))))).))((.(((.(.((((.((.....)).))))).))).)).))))))))..)))))))).. ( -47.20, z-score = 0.59, R) >droEre2.scaffold_4820 3742062 112 - 10470090 CAGCUGCGAAUCGAUAUUCGUCGAUUUGAUGGCUGGUUGAGUGCGCGGCGGCCUCUGCACGGUGCGACCGGCGCGUUGGGGGGC-UCCGCGCUCAGCUGUUCAUGCGCGCUGG (((((((((((((((....)))))))).((((..((((((..((((((.(((((((..(((.(((.....))))))..))))))-)))))))))))))..))))))).)))). ( -54.50, z-score = -1.58, R) >droYak2.chr3R 3665969 113 - 28832112 CAGCUGCGAAUCGAUAUUCGACGAUUUGACGGCUGGGUGAGUGCGCGGCGGCCUCUGCACGAUGCGACCGGGGCGUUGGGGGGCCUCCGCGCUCAGCUGUUCAUGCGCGCGAG (((((((((((((........))))))).)))))).(((.(.((((((.(((((((...((((((.......))))))))))))).)))))).).((.......)).)))... ( -54.40, z-score = -1.50, R) >droSec1.super_13 103186 112 + 2104621 CAGCUGCGAAUCGAUAUUCGGCGAUUUGACGGCUGGGUGAAGGCGCGGCGACCUCUGCACGGUGCGACCGCCGCGUU-GGGGGCCUCCGCGCACAGCUGUUCAUGCGCGCUUG (((((((((((((........))))))).))))))((((...((((((.(.((((.((.(((((....))))).)).-))))..).))))))...((.......)).)))).. ( -50.70, z-score = -0.63, R) >droSim1.chr3R 21145552 113 + 27517382 CAGCUGCGAAUCGAUAUUCGGCGAUUUGACGGCUGGGUGAAGGCGCGGCGACCUCUGCACGGUGCGACCGCCGCGUUAGGGGGCCUCCGCGCACAGCUGUUCAUGCGCGCUUG (((((((((((((........))))))).))))))((((...((((((.(.(((((((.(((((....))))).).))))))..).))))))...((.......)).)))).. ( -51.10, z-score = -0.77, R) >droVir3.scaffold_12855 6676465 90 + 10161210 CAGCUUUUAACGGAUGUUGAGCUGUUUGAAUACAGAGCUUUUGCAUACCGGUUUAUGUACAGCUGGAAAACUUUGUUGGGGUGGCAACGC----------------------- (((((.....(((((((.(((((.(........).)))))..)))).)))((......)))))))...............(((....)))----------------------- ( -21.70, z-score = -0.17, R) >consensus CAGCUGCGAAUCGAUAUUCGGCGAUUUGACGGCUGGGUGAAUGCGCGGCGGCCUCUGCACGGUGCGACCGCCGCGUUGGGGGGCCUCCGCGCUCAGCUGUUCAUGCGCGCUUG (((((((((((((........))))))).)))))).......((((((.(.(((((...(((((((.....)))))))))))).).))))))...(((((....))).))... (-31.10 = -32.27 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:43:18 2011